View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5350_low_6 (Length: 257)
Name: NF5350_low_6
Description: NF5350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5350_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 29613133 - 29613348
Alignment:
| Q |
23 |
taagccatattataagaaaaattaatattctgaaagtgactttccgaatttgacccaatataataaaattcattatgatcatatttttgtaacaacttca |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29613133 |
taagccatattataagaaaaattaatattctgaaagtgactttccgaatttgacccaatataataaaatccattatgatcatatttttgtaacaacttca |
29613232 |
T |
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| Q |
123 |
ccaaattttcagtcacaaaaaatgtgtcatcatcccccatcacaaaccacctcacattctccaaccttaaccttactgtctccgacacaatcctagatat |
222 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29613233 |
ccaaattctcagtcacaaaaaatgtgtcatcatcccccatcacaaaccacctcacattctccaaccttaaccttactgtctccgacacaatcctagatat |
29613332 |
T |
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| Q |
223 |
cctaatccctgacctt |
238 |
Q |
| |
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|||||||||||||||| |
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| T |
29613333 |
cctaatccctgacctt |
29613348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 11092085 - 11091923
Alignment:
| Q |
23 |
taagccatattataagaaaaattaatattctgaaagtgactttccgaatttgacccaatataataaaattcattatgatcatatttttgtaacaacttca |
122 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || ||||| || ||||| ||||| |||||||||| ||||||||||||||| | || | || | |
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| T |
11092085 |
taagccatattataagaaaaataaatattctgcaaatgactctctgaattactaccaatgtaataaaattgattatgatcatatttcttcaaaacattaa |
11091986 |
T |
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| Q |
123 |
ccaaattttcagtcacaaaaaatgtgtcatcatcccccatcacaaaccacctcacattctcca |
185 |
Q |
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||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||| |||| |
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| T |
11091985 |
ccaaattctcagcaacaaaaaatgtatcatcatcacccatcacaaaccacctcacattttcca |
11091923 |
T |
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