View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5351-Insertion-1 (Length: 1121)
Name: NF5351-Insertion-1
Description: NF5351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5351-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 141 - 573
Target Start/End: Original strand, 40992899 - 40993322
Alignment:
| Q |
141 |
tcaatgatattatgaagaaaggtgctaaaacgagtcacaccatcgatcttcaaagaaatgacatgaagtgtagcacatttcccttgaaaacaactttgct |
240 |
Q |
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| T |
40992899 |
tcaatgatattatgaagaaaggtgctaaaacgagtcacaccatcgatcttcaaagaaatgacatgaagcgtagcacatttcccttgaaaacaactttgtt |
40992998 |
T |
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| Q |
241 |
taatacaattcgtttgtcctcatctagttttctagggttttccttaactttgtctttcttatcatatttctttgcatcgtcacaattttctttcttgggt |
340 |
Q |
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| T |
40992999 |
taatacaattcgtttgtcctcatctagttttctaaggttttccttaactttgtctttcttatcatatttctttgcatcgtcacaattttctttcttgggt |
40993098 |
T |
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| Q |
341 |
tccttttggtcacatggaatcaacttatttcaccactcccaccaataaccaattcacattctaatccaccaatactacttattctttatggcttcacctc |
440 |
Q |
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| T |
40993099 |
tccttttggtcacatggaatcaacttatttcaccactccc-------accaattcacattctaatccatcagtactacttattctttatggcttcacctc |
40993191 |
T |
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| Q |
441 |
ttttattgtattttttaaaatatttttctcataggtcacccaactagatcctaacacgaatttcattaagtcagattgttgatggtcttttgatcaagat |
540 |
Q |
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| T |
40993192 |
ttttattgtatttttt--aatatttttctcataggtcacccaactagatcctaacacgaatttcattaagtcggactgttgatggtcttttgatcaagat |
40993289 |
T |
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| Q |
541 |
tatacgatataaaaagaatgctaattaatctta |
573 |
Q |
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| T |
40993290 |
tatacgatataaaaagaatgctaattaatctta |
40993322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 785 - 1052
Target Start/End: Original strand, 40993329 - 40993589
Alignment:
| Q |
785 |
cttttcaccatacagttaatattccatattggcatattgtagacatatacgtgattattgggattgttggcattaaccactatcttattatgtcaattac |
884 |
Q |
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| T |
40993329 |
cttttcaccatacaattaatattccatattggcatattgtagacatatacgtgattatt-ggattgttggcattaaccactatcttattatgtcaattac |
40993427 |
T |
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| Q |
885 |
tnnnnnnntaatatactgcactaatctcgtgtgttttgtgaagaattagtgactcacatttgtttatgccctacattgtatatgtactggaagtgaacaa |
984 |
Q |
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| T |
40993428 |
taaaaaaataatatactgcactaatcccatgtgttttgtgaag-attagtgactcacatttgtttatgccctaca-tgtatatgtact-gaagtgaacaa |
40993524 |
T |
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| Q |
985 |
tcaccttaaaccaaaataacaacgaatcacaccgttgtgcaaatataataggctcccgagttactttt |
1052 |
Q |
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| T |
40993525 |
tcacc-taaaccaaaataacaccg-atcaca-cgttgtgcaaatataataggctcccgagttactttt |
40993589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 40992758 - 40992842
Alignment:
| Q |
7 |
atacacaagaaataattaccaattccatgaagnnnnnnntaagcaagatgatactccaatgtgaagtagtaaatcattgtgttat |
91 |
Q |
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| T |
40992758 |
atacacaagaaataattatcaattccatgaataaaaaaataagcaagatgatactccaatgtgaagtagtaaatcattgtgttat |
40992842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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