View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5351-Insertion-10 (Length: 230)
Name: NF5351-Insertion-10
Description: NF5351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5351-Insertion-10 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 31950948 - 31951170
Alignment:
| Q |
8 |
ttgttttgggagaaaattccagaccatttccatgtctaggagaaacctcacatacaataacggtagctggattaaaagcttgcacaccggccacatacaa |
107 |
Q |
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|||| ||||||| ||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||| |
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| T |
31950948 |
ttgtcttgggagcaaattccagaccagttccatgtccatgagaaacctcccatacaataacggtagctggattaaaagcttgcgcagcagccacatacaa |
31951047 |
T |
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| Q |
108 |
tgtaccattggctgtgatgataacatgtccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggtcgtcttgcc |
207 |
Q |
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| T |
31951048 |
cgtaccgttgtgtgtgatgatagcatctccagatataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttgcc |
31951147 |
T |
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| Q |
208 |
ttcttagaaggaggcctttggga |
230 |
Q |
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| T |
31951148 |
ttcttagaaggaggcctttggga |
31951170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 31951652 - 31951462
Alignment:
| Q |
8 |
ttgttttgggagaaaattccagaccatttccatgtctaggagaaacctcacatacaataacggtagctggattaaaagcttgcacaccggccacatacaa |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |
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| T |
31951652 |
ttgtcttgggagaaaattccagaccatttccatgtccaggagaagcctcacatacaataacagtagctggattaaaagctcgcacaccggccacatgcaa |
31951553 |
T |
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| Q |
108 |
tgtaccattggctgtgatgataacatgtccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggt |
198 |
Q |
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| T |
31951552 |
tgtaccattgtctgtgatgatagcatctccagctataattccacttggcccacaatctaatagccctttactaatgcaaaaccatttgggt |
31951462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 3498483 - 3498705
Alignment:
| Q |
8 |
ttgttttgggagaaaattccagaccatttccatgtctaggagaaacctcacatacaataacggtagctggattaaaagcttgcacaccggccacatacaa |
107 |
Q |
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|||| |||||||||||||||||||||||||| |||| ||| ||||| | ||||| ||||||||||||||| |||||||| ||||||||||||| | || |
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| T |
3498483 |
ttgtcttgggagaaaattccagaccatttccctgtccaggcaaaaccacccatactataacggtagctggactaaaagctagcacaccggccacgtgtaa |
3498582 |
T |
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| Q |
108 |
tgtaccattggctgtgatgataacatgtccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggtcgtcttgcc |
207 |
Q |
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| T |
3498583 |
cataccactgtctgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaaccatttgggcggtgttgca |
3498682 |
T |
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| Q |
208 |
ttcttagaaggaggcctttggga |
230 |
Q |
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|||| || ||||||||||||||| |
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| T |
3498683 |
ttctgagtaggaggcctttggga |
3498705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 3510646 - 3510863
Alignment:
| Q |
13 |
ttgggagaaaattccagaccatttccatgtctaggagaaacctcacatacaataacggtagctggattaaaagcttgcacaccggccacatacaatgtac |
112 |
Q |
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||||||||||||| |||| ||||||| | | ||| |||||| |||||||||| || ||||||||||| |||| |||||||||||||| ||| |||| |
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| T |
3510646 |
ttgggagaaaattggagactatttccacgaccaggcataacctcccatacaataatggcagctggattaacagctggcacaccggccacaagcaaggtac |
3510745 |
T |
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| Q |
113 |
cattggctgtgatgataacatgtccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggtcgtcttgccttctt |
212 |
Q |
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| T |
3510746 |
cgttgtctgtgatgatagcatcaccggttataattccacttggcccgcatgccaatagccctttactagtgcaaaaccatttgtgcagtgttgcattctg |
3510845 |
T |
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| Q |
213 |
agaaggaggcctttggga |
230 |
Q |
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| T |
3510846 |
agtaggaggccattggga |
3510863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 2354640 - 2354746
Alignment:
| Q |
120 |
tgtgatgataacatgtccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggtcgtcttgccttcttagaagga |
219 |
Q |
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| T |
2354640 |
tgtgatgatagcatctccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggccgtgttgcattctgagtagga |
2354739 |
T |
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| Q |
220 |
ggccttt |
226 |
Q |
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| T |
2354740 |
ggccttt |
2354746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 2354610 - 2354518
Alignment:
| Q |
136 |
ccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggtcgtcttgccttcttagaaggaggcctttgg |
228 |
Q |
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| T |
2354610 |
ccagctataataccacttggctcacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttgcattatgagtaagaggcctttgg |
2354518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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