View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5351-Insertion-2 (Length: 1106)
Name: NF5351-Insertion-2
Description: NF5351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5351-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 296 - 981
Target Start/End: Original strand, 5064329 - 5065017
Alignment:
| Q |
296 |
actagtactaatgtctttagattcttagaatgaggtattctataatgatttataaaacatacaataggaagaaaacccaaaattaaaagtaactataatt |
395 |
Q |
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| T |
5064329 |
actagtactaatgtctttagattcttagaatgaggtattctataatgatttataaaacatacaataggaagaaaacacaaaattaaaagtaactataatt |
5064428 |
T |
|
| Q |
396 |
agcagttactataattttctacagtattagctaaactaattacaacgtacgtttccctagcttagcaaaacgtatatatccctcaaccnnnnnnntacaa |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5064429 |
agcagttactataattttctacagtattagctaaactaattacaacgtacgtttccctagcttagcaaaacgtatatatccctcaaccaaaaaaatacaa |
5064528 |
T |
|
| Q |
496 |
tggttgtgggaaatacgtactatactcgacatatttgttcnnnnnnngtttaacatgctgcagaaggattgttgaaaggattgtagaaatgagtatttgg |
595 |
Q |
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| T |
5064529 |
tggttgtgggaaatacgtactatactcgacatatttgttctttttttgtttaacatgctgcagaaggattgttgaaaggattgtagaaatgagtatttgg |
5064628 |
T |
|
| Q |
596 |
agccatagtgaaggcagtgatcttattggaaccaccaccaccgtcggcgacgcggccgagtctttcgcaagacgggcagatggagagggtggctgcaggc |
695 |
Q |
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| T |
5064629 |
agccatagtgaaggcagtgatcttattggaaccaccaccaccgtcggcgacgcggccgagtctttcgcaagacgggcagatggagagggtggctgcaggc |
5064728 |
T |
|
| Q |
696 |
ataggcatgtacaaaggttgtgctactttcaatgacttcagctcttgtaactccttttttgagcctcctgttttcgtctgttaatgtttcacaacannnn |
795 |
Q |
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| T |
5064729 |
ataggcatgtacaaaggttgtgctactttcaatgacttcagctcttgtaactcc-tttttgagcctcctgttttcgtctgttaatgtttcacaaca-ttt |
5064826 |
T |
|
| Q |
796 |
nnncaagaactcgcaatcccaccctctgtttgtttcagctttgttctgtaaaattcaaaccaaaatttattt-atataagtcacaacaagcatgcaccaa |
894 |
Q |
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| T |
5064827 |
tttcaagaactcgcaatcc--acctctgtttgtttcagctttgttctgtaaaattcaaaccaaaatttatttaatataagtcacaacaagcatgcaccaa |
5064924 |
T |
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| Q |
895 |
ca-ttattaccttaatctgtc-aatccatacttaacaa-cac-aatcc-aaagcaaaagaaggctttttaaa-tatattccctccttacttta |
981 |
Q |
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|| |||||| ||||||||||| |||||||||||||||| ||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
5064925 |
catttattagcttaatctgtcaaatccatacttaacaaccacaaatccaaaagcaaaggaaggctttttaaattatattccctccttacttta |
5065017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 5063993 - 5064226
Alignment:
| Q |
7 |
atcaataatatatgaagtgattttgtcttaacaaatttatttgattgattgattccgtgagtaaatttgttcccataggtttcataa---------aaaa |
97 |
Q |
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| T |
5063993 |
atcaataatatatgaagtgattttgtcttaacaaatttatttgattgattgattccgtgagtaaatttgttcccataggtttcataaaaaaaataaaaaa |
5064092 |
T |
|
| Q |
98 |
catgttcttccataattctattatacaagaattacttcatagtccatgcttgttgcatatttgctgcgcaaaaacaaaactactaattgaaacacaagaa |
197 |
Q |
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| T |
5064093 |
catgttcttccataattctattatacaagaattacttcatagtccatgcttgttgcatatttgctgcgcaaaaacaaaactactaattgaaacacaagaa |
5064192 |
T |
|
| Q |
198 |
ataatgttatcattttcgatcaaagggtcgagat |
231 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
5064193 |
ataatgttatcattttcgatcaaagggtcgagat |
5064226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 681 - 791
Target Start/End: Complemental strand, 40300465 - 40300356
Alignment:
| Q |
681 |
agggtggctgcaggcataggcatgtacaaaggttgtgctactttcaatgacttcagctcttgtaactccttttttgagcctcctgttttcgtctgttaat |
780 |
Q |
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||||| ||||| ||||||||||| ||||| |||| | ||| ||||| || ||||| ||||| | |||||||| | |||||||| || || ||||||||| |
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| T |
40300465 |
agggtagctgctggcataggcatatacaagggttttactagtttcagtgccttcaattcttgcacctccttttgt-agcctcctattctcttctgttaat |
40300367 |
T |
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| Q |
781 |
gtttcacaaca |
791 |
Q |
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| T |
40300366 |
gtttcacaaca |
40300356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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