View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5351-Insertion-4 (Length: 710)
Name: NF5351-Insertion-4
Description: NF5351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5351-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 10 - 710
Target Start/End: Original strand, 7082196 - 7082881
Alignment:
| Q |
10 |
gaaaccaagaatcatgattttgggcataatgaagtgaatgggattatgatatgcaacaannnnnnnnnnnnnnnnnnnnnagctgaatcttctcttatat |
109 |
Q |
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| T |
7082196 |
gaaaccaagaatcatgattttgggcataatgaagtgaatgggattatgatatgcaacaatttttttggtgtttttcttttagctgaatcttctcttatat |
7082295 |
T |
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| Q |
110 |
tctacta-cagagacagctacatgaaacataatctatattggccacgctcatgattcagttcttttatcactactttattttatagctacctcttcatag |
208 |
Q |
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| T |
7082296 |
tctactatcagagacagcaaaatgaaacacaatctatattggccacgctcatgattcagttcttttatcactactttattttaaagctacctcttcatag |
7082395 |
T |
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| Q |
209 |
tttccaatagtataacataagattaagannnnnnnnnnnnnnnnnnnngctatgattctcgcatatgtaaatacgaagactaatatctcgagtcagatat |
308 |
Q |
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| T |
7082396 |
tttccaatagtatcacataagattaagattttttttttt---------gctatgattcttgcatatgtaaatacaaagactaatatctcgagtcagatat |
7082486 |
T |
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| Q |
309 |
gactatgattaatgaattataaagttctctcgagttttaatgatgttttctcaaaactgattttgaatcaaagacttttagttacactgatatagatttg |
408 |
Q |
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| T |
7082487 |
gactatgattaatagattataaagttctctcgagttttaatgatgttttctcaaaactgattttgaatcaaagatttttagttacactgatatagatttg |
7082586 |
T |
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| Q |
409 |
aataatcttattatgccctattggttggttataaaattaaaatatagttaaatagataatgaaaatgaaggctaagaattcagaagtttagaaaaagaga |
508 |
Q |
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| T |
7082587 |
aataatcttattatgcccta----ttggttataaaattaaaatatagttaaatagataatgaaaatgaaggctaagaattcagaagtttagaaaaagaga |
7082682 |
T |
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| Q |
509 |
tagtttaaggtatcaaaattattaatattttttgaattatgtgttatttggtatgtaatgatgttagttaacttctgtcttgtaactaaacaaataaaaa |
608 |
Q |
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| T |
7082683 |
tagtttaaggtatcaaaattattagtattttttgaattatgtgttatttggtgtgta---atgttagttaacttctgtcttgtaactaaacaaataaaaa |
7082779 |
T |
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| Q |
609 |
atggaaggatattgaggaaactaatttgaccataatgattggttaaacttatgataagtgacagaaataattgtgttgagaccatatcatatagtataca |
708 |
Q |
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| T |
7082780 |
atggaaggatattgaggaaactaatttgaccataatgattggttaaacttatgataagtgacagaaataattgtgttgagaccatatcatatagtaaaca |
7082879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 49019583 - 49019528
Alignment:
| Q |
12 |
aaccaagaatcatgattttgggcataatgaagtgaatgggattatgatatgcaaca |
67 |
Q |
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| T |
49019583 |
aaccaagaatcatgattgtaggcataatgaagtgagtaggattatgatatgcaaca |
49019528 |
T |
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