View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5351-Insertion-9 (Length: 328)
Name: NF5351-Insertion-9
Description: NF5351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5351-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 33855800 - 33855499
Alignment:
| Q |
8 |
catatttggattctttgttgtaaatacatgacacatctataaatctatatagttatatctaaaatcaatgtcgtgatcattaataattaatccactgttt |
107 |
Q |
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| T |
33855800 |
catatttggattctttgttgtaaatgcatgacacgtc-ataaatctatatagttatatctaaaatcaatgtcgtgatcattaataattaatccactgttt |
33855702 |
T |
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| Q |
108 |
atatcatctgatttgcctgatctcggattaatggtcaagatatataaaactatgtgtaacggcatgtattttttactgcaggaaattgtcatccctcgtc |
207 |
Q |
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| T |
33855701 |
atatcatctgatttgcctgatctcggattaatggtcaagatatataaaactatgtgtaacggcatgtattttttactgcaggaaattgtcatccctcgtc |
33855602 |
T |
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| Q |
208 |
tctctttctctttcacacacaataatatcatgatttacctactacctgcaaacagtaatattttatcctaaagaatttaagtattttcatgctagcttta |
307 |
Q |
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| T |
33855601 |
tctctttctctttcacacacaataatatcatgatttacctactacctgcaaacagtaatattttgtcctaaagaatttaagtattttcatgctagcttta |
33855502 |
T |
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| Q |
308 |
ttt |
310 |
Q |
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| T |
33855501 |
ttt |
33855499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 47 - 242
Target Start/End: Complemental strand, 33866421 - 33866226
Alignment:
| Q |
47 |
taaatctatatagttatatctaaaatcaatgtcgtgatcattaataattaatccactgtttatatcatctgatttgcctgatctcggattaatggtcaag |
146 |
Q |
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| T |
33866421 |
taaatctaaatagttcgatctaaaatcaatgtcgtgatcattaataattaatttactgattgtataatctgaattgcctgatcttggattaatggtcaag |
33866322 |
T |
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| Q |
147 |
atatataaaactatgtgtaacggcatgtattttttactgcaggaaattgtcatccctcgtctctctttctctttcacacacaataatatcatgatt |
242 |
Q |
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| T |
33866321 |
atatataaaactatgtgtaacggcacgtattttttactgcaggaaattgtcatccctcatctctctttctctttcacacacaataatatcatgatt |
33866226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 33865973 - 33865909
Alignment:
| Q |
239 |
gatttacctactacctgcaaacagtaatattttatcctaaagaatttaagtattttcatgctagct |
304 |
Q |
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| T |
33865973 |
gatttacctgctacatgcaaacaataatattt-attcaaaagagtttaagtattttcatgctagct |
33865909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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