View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5351_high_2 (Length: 570)
Name: NF5351_high_2
Description: NF5351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5351_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 551
Target Start/End: Complemental strand, 31952184 - 31951649
Alignment:
| Q |
11 |
catcatcacaatatgtagaaaatattatattacacaagttggtcatagaagaatatgtaggcagtgacaacattaataataaaggcaacaaaaatagtag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31952184 |
catcatcacaatatgtagaaaatattatattacacaagttggtcatagaagaatttgtaggcagtgacaacattaataataaaggcaacaaaaatagtag |
31952085 |
T |
|
| Q |
111 |
gcaagaatcaaggataaaatgcatattnnnnnnntatatcatattgccagtgaaaaaacacaggtttagacataaatgtttaataaatttgaacaactta |
210 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
31952084 |
gcaagaatcaaggataaaatgcatattaaaaaaatatatcatattgccagtgaaaaaacacaggtttagacataaatgtttaacaaatttgaacagctta |
31951985 |
T |
|
| Q |
211 |
acacaatatgtgggtaaaataaggcttcacagatcttagtgttgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951984 |
acacaatatgtgggtaaaataaggcttcatagatcttagtgtcgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataat |
31951885 |
T |
|
| Q |
311 |
ttacaaagaatatattgaaattgaacgggggattcaaattagaattatgtacataccctcaactacgaaaacaactatcacagaaccaccacacatcaga |
410 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951884 |
gtaaaaagaatatattgaaattgaatgggggattcaagttagaatt-----cataccctcaactacgaaaacaactatcacagaaccaccacacatcaga |
31951790 |
T |
|
| Q |
411 |
tcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactcacatatgctgaacaaaaaggcagctaaaggagcaaaaccactc |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31951789 |
tcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactcacatatgctgaacaaaatggcagctaaaggagcaaaaccactc |
31951690 |
T |
|
| Q |
511 |
tagttgggtgggctaagaggtgctgaagttgtaatacttgt |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31951689 |
tagttgggtgggctaagaggtgctgaagttgtaatacttgt |
31951649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 10 - 551
Target Start/End: Original strand, 31950410 - 31950951
Alignment:
| Q |
10 |
acatcatcacaatatgtagaaaatattatattacacaagttggtcatagaagaatatgtaggcagtgacaacattaataataaaggcaacaaaaatagta |
109 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||||||||||| ||||| |||||||||||||||| |||||| ||| |||||||||||||||||| |
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| T |
31950410 |
acatcatcacaatatgtaaaagatattatattgcacaagttggtcatggaagattatgtaggcagtgacatcattaaaaatgaaggcaacaaaaatagta |
31950509 |
T |
|
| Q |
110 |
ggcaagaatcaaggataaaatgcatattnnnnnnntatatcatattgccagtgaaaaaacacaggtttagacataaatgtttaataaatttgaacaactt |
209 |
Q |
| |
|
||||| ||||||| | |||||| ||||| ||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||||||||||| ||| |
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|
| T |
31950510 |
ggcaaaaatcaagaagaaaatgaatattaaaggaatatatcatattgccaatgaaaaatcacatgtttagatataaatgtttaaaaaatttgaacagctt |
31950609 |
T |
|
| Q |
210 |
aacacaatatgtgggtaaaataaggcttcacagatcttagtgttgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataa |
309 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
31950610 |
aacacaatatgtaggtaaaataaagcttcacagatcttagtgtcgttcaattggaatcagttataaatatggttaggataataatgaatgtaaataataa |
31950709 |
T |
|
| Q |
310 |
tttacaaagaatatattgaaattgaacgggggattcaaattagaattatgtacataccctcaactacgaaaacaactatcacagaaccaccacacatcag |
409 |
Q |
| |
|
| |||| | |||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||| || | |
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|
| T |
31950710 |
tgtacacaaaatataatgaaattgaagaggggattcaagttagaattatgtacataccctcaactacgacaaaaactatcacagaacaaccacatgtcgg |
31950809 |
T |
|
| Q |
410 |
atcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactcacatatgctgaacaaaaaggcagctaaaggagcaaaaccact |
509 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| | ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
31950810 |
atcaaaggctacccctactacaccacaacacttggtagtgagtgcagcttcaaaactcacatatactgaacaaaaaggcagctaaaggagcaaaaccact |
31950909 |
T |
|
| Q |
510 |
ctagttgggtgggctaagaggtgctgaagttgtaatacttgt |
551 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31950910 |
ccagttgggtgggctaagaggtgttgaagttgtaatacttgt |
31950951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 69 - 479
Target Start/End: Original strand, 3497957 - 3498361
Alignment:
| Q |
69 |
aggcagtgacaacattaataataaaggcaacaaaaatagtaggcaagaatcaaggataaaatgcatattnnnnnnntatatcatattgccagtgaaaaaa |
168 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
3497957 |
aggccgtgacagcattaataatgaaggcaacagtaatagtaggcaagaatcaaggagaaaatgcatattaaaggaatatatcatattgccagtgaaaaaa |
3498056 |
T |
|
| Q |
169 |
cacaggtttagacataaatgtttaataaatttgaacaacttaacacaatatgtgggtaaaataaggcttcacagatcttagtgttgttcaattggaatca |
268 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| | |
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|
| T |
3498057 |
cacaggtttagacataaatgtttaaaaaacttgaacagtttaacacaatatg--ggtaaaataaggcttcacagatcttagtgccattcaattgtaatta |
3498154 |
T |
|
| Q |
269 |
att-ataaatatggttaagataataatgaatgtaaataataatttacaaagaatatattgaaattgaacgggggattcaaattagaattatgtacatacc |
367 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
3498155 |
gtttataaatatggttaggataataatgaatgtaaataataatgtacaaagaatatattgaaattga-----ggattcaagttagaattatgtacatacc |
3498249 |
T |
|
| Q |
368 |
ctcaactacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactc |
467 |
Q |
| |
|
||||||||| | | || |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |
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|
| T |
3498250 |
ctcaactacaacagcagctatcacagaaccaccacgcgttggatcaaaggctacccctgctacaccacaacactgggtagagggtgcagcttcagaactc |
3498349 |
T |
|
| Q |
468 |
acatatgctgaa |
479 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3498350 |
acatatgctgaa |
3498361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 228 - 451
Target Start/End: Original strand, 3510281 - 3510507
Alignment:
| Q |
228 |
aataaggcttcacagatcttagtgttgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataatttacaaagaatatattg |
327 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||| |||| |||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |
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|
| T |
3510281 |
aataagacttcacagatcttggtgccattcaattggtatcagttataaatatggtttagataatgacgaatgtaaataataatgtacaaagaatatattg |
3510380 |
T |
|
| Q |
328 |
aaattga---acgggggattcaaattagaattatgtacataccctcaactacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccc |
424 |
Q |
| |
|
||||||| ||||| |||| | ||||| || | |||||||||||||| | | || ||||||||||||| ||| || |||| |||||| |||| |
|
|
| T |
3510381 |
aaattgaaggacgggaagatcaagtcagaatcatatgcataccctcaactatcacagcagctatcacagaaccgtcacgagtcggatcgaaggctgcccc |
3510480 |
T |
|
| Q |
425 |
tgctacaccacaacactgggtagtggg |
451 |
Q |
| |
|
|||||||||| ||||| ||||||||| |
|
|
| T |
3510481 |
tgctacaccagaacaccaggtagtggg |
3510507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 475 - 551
Target Start/End: Original strand, 3498410 - 3498486
Alignment:
| Q |
475 |
ctgaacaaaaaggcagctaaaggagcaaaaccactctagttgggtgggctaagaggtgctgaagttgtaatacttgt |
551 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3498410 |
ctgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgt |
3498486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 532
Target Start/End: Original strand, 3510582 - 3510622
Alignment:
| Q |
492 |
taaaggagcaaaaccactctagttgggtgggctaagaggtg |
532 |
Q |
| |
|
|||||| |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
3510582 |
taaaggtgcaaaaccactccagttgggtgcgctaagaggtg |
3510622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 221 - 335
Target Start/End: Complemental strand, 22927475 - 22927361
Alignment:
| Q |
221 |
tgggtaaaataaggcttcacagatcttagtgttgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataatttacaaagaa |
320 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||||||||||| | ||||| |||||||||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
22927475 |
tgggtaaaataaggcttcatagatcttaatgtcattcaattggaaatagttatatatatggttaaaataatgatgaatgtaaataataatgtacaaagaa |
22927376 |
T |
|
| Q |
321 |
tatattgaaattgaa |
335 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
22927375 |
tatattaaaactgaa |
22927361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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