View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5351_high_3 (Length: 387)
Name: NF5351_high_3
Description: NF5351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5351_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 7082198 - 7081839
Alignment:
| Q |
18 |
ttcatcacccgcatgctctcttctcaaacctcacactctacattctcactctaactnnnnnnnnnnnnnnnnnctataaataccaactacaccccccaac |
117 |
Q |
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| T |
7082198 |
ttcatcacccgcatgctctcttctcaaacctcacactctacattctcactctaactctcacacacacacacacctataaataccaactacaccccccaac |
7082099 |
T |
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| Q |
118 |
ctttccctcacctctacttcaacactaaaaccaaatctannnnnnnnnnnnnnnnnnacttgttcccaaaatggaattttctggttttgaaggctttgaa |
217 |
Q |
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| T |
7082098 |
ctttctctcacctctacttcaacactaaaaccaaatctatctatctctccctctctcacttgttcccaaaatggaattttctggttttgaaggctttgaa |
7081999 |
T |
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| Q |
218 |
aaaaggttagaacttcacttctttggtgatgatccaaatccaaccattaatcaccaactaggcctaagaaaacttgagtttgaatccattcaacaaatcc |
317 |
Q |
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| T |
7081998 |
aaaagattagaacttcatttctttggtgatgatccaaatccaaccattaatcaccaactaggcctaagaaaacttgagtttgaatccattcaacaaatcc |
7081899 |
T |
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| Q |
318 |
tacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgcctatg |
377 |
Q |
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| T |
7081898 |
tacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgcctatg |
7081839 |
T |
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Back To:
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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 197 - 372
Target Start/End: Original strand, 49019792 - 49019958
Alignment:
| Q |
197 |
tctggttttgaaggctttgaaaaaaggttagaacttcacttctttggtgatgatccaaatccaaccattaatcaccaactaggcctaagaaaacttgagt |
296 |
Q |
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| T |
49019792 |
tctggctttgaaggatttgagaaacggttggaacttcatttctttggagatgatccaatt---acctt------ccaactaggtctaagaaaaattgatt |
49019882 |
T |
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| Q |
297 |
ttgaatccattcaacaaatcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgc |
372 |
Q |
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| T |
49019883 |
ttgaatcaatacaacaagttttagaagctgttcaatgcacagtggtttcagcagttggtaactcttactttgatgc |
49019958 |
T |
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