View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5351_low_5 (Length: 296)
Name: NF5351_low_5
Description: NF5351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5351_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 40992235 - 40992509
Alignment:
| Q |
11 |
cataggttaggtgacgtgaaattaggccacatgcatgatattcataagatccaaggttgaatctagaaaattagcattccctagcaag-atatgttttgt |
109 |
Q |
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| T |
40992235 |
cataggttaggtgacgtgaaattaggccacatgcatgatattcataagatccaaggttgaatctagaaaattagcattccctagcaagcatatgttttgt |
40992334 |
T |
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| Q |
110 |
tgtttgcttgtaagtgaaaggaacatatcaataattcaattttacaaatgattaaaattcaactaaaattaaagtaattaaactcaaatggttaataagt |
209 |
Q |
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| T |
40992335 |
tgtttgcttgta-gtgaaaggaacatatcaataattcaattttacaaatgattaaaattcaactaaaattaaagtaattaaactcaagtggttaataagt |
40992433 |
T |
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| Q |
210 |
tccttaaggcaaatcgttcttgagaacttgaattcaattcatgtatagaattcttggtaatattttacttaccttt |
285 |
Q |
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| T |
40992434 |
ttcttaagataaatcgttcttgagaacttgaattcaattcatgtataaaattcttggtaatattttacttaccttt |
40992509 |
T |
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