View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5351_low_6 (Length: 283)
Name: NF5351_low_6
Description: NF5351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5351_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 40992491 - 40992763
Alignment:
| Q |
1 |
taatattttacttaactttataacgaacaccaaattattaggannnnnnnnnnn-aacgaatgagagccaaacctttcgtgacttctacttctttaattt |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40992491 |
taatattttacttacctttataacgaacaccaaattattagggttttttttttttaacgggcgagagccaaacctttcgtgacttctacttctttaattc |
40992590 |
T |
|
| Q |
100 |
attatttaaactttgatttacttataatgaaaagaacaatttggtcacatcatgatataatatcatatgcattcataagaaaataatgtaacatatgttc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40992591 |
attatttaaactttgatttacttataatgaaaagaacaatttggtcacatcatgatataatatcatatgcattcataagaaaataatataacatatgttc |
40992690 |
T |
|
| Q |
200 |
tctacaaaagtctgaac-------ccgaattgagcactgaacaaccttagaaaatatcgttgaaactatacac |
265 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||| || |||| ||||||||||||||||| |||||| |
|
|
| T |
40992691 |
tctacaaaagtctgaacgttctggccggattaagcactgagcagccttggaaaatatcgttgaaacaatacac |
40992763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University