View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5351_low_7 (Length: 204)
Name: NF5351_low_7
Description: NF5351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5351_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 42224345 - 42224518
Alignment:
| Q |
15 |
cataggcagaccgtacagtgtccataccatgcagttaacaagtgttgctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgca |
114 |
Q |
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| T |
42224345 |
cataggcagaccgtatagtgtccataccatgcagttaacaagtgttgctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgca |
42224444 |
T |
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| Q |
115 |
ataaaagttggcctggannnnnnnnnnnnnnnncaatacaattattcaattaaacaagggaaatgtacacaaag |
188 |
Q |
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| T |
42224445 |
ataaaagttggcctggatttttatttttattttcaatacaattattcaattaaacaagggaaatgtacacaaag |
42224518 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 36675453 - 36675385
Alignment:
| Q |
61 |
gctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgcaataaaagttggcctg |
129 |
Q |
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| T |
36675453 |
gctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctg |
36675385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 36685535 - 36685467
Alignment:
| Q |
61 |
gctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgcaataaaagttggcctg |
129 |
Q |
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| T |
36685535 |
gctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctg |
36685467 |
T |
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