View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5352-Insertion-1 (Length: 620)

Name: NF5352-Insertion-1
Description: NF5352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5352-Insertion-1
NF5352-Insertion-1
[»] chr3 (1 HSPs)
chr3 (7-620)||(7736683-7737305)


Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 7 - 620
Target Start/End: Original strand, 7736683 - 7737305
Alignment:
Q  7 agttttcaacaaaactctgaatcttgcttttttccatattaagtacattatattcagcaacatctaaagaaaaaacacagaacaaatggaaaataataag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  7736683 agttttcaacaaaactctgaatcttgcttttttccatattaagtacattatattcagcaacatctaaagaaaaaacggagaacaaatggaaaataataag 7736782  T
Q  107 attagagatgattggttcaaatctgacaggctcaaatgacaatatcacaattcataccaagatgctttaccacatatatattgagatgctacgagnnnnn 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||         
T  7736783 attagagatgattggttcaaatctgacaggctcaaatgacaatatcacaattcataccaagatgctttaccacatatatattgagatgttacgagaaaaa 7736882  T
Q  207 nnnncagagacaattcgaaaagtccattataactagaaaagtatcctacctgaaacagcaacaggtacagatttggtagcagataaatcattacagggtg 306  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  7736883 aaa-cagagacaattcgaaaagtccattataactagaaaagtatcctacctgaaacagcaacaggtacagatttggtagcagataaatcattattgggtg 7736981  T
Q  307 actctcttgtacgcttatctatatgaagatcagcatattgaacttttctgttaggtattggtggacccactcgtcgttcagatgcaagtctatgctcctt 406  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7736982 actctcttgtacgcttttctatacgaagatcggcatattgaacttttctgttaggtattggtggacccactcgtcgttcagatgcaagtctatgctcctt 7737081  T
Q  407 taatggtcctacaataagaacaatatcaaaaagaaatcccaagcaaacatcatggaaaatgtgcgaggagtaaaggctttaa---------acatttccc 497  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||||         ||||||||     
T  7737082 taatggtcctacaataagaacaatctcaaaaagaaatcccaagcaaacatcatggaaaatgtgc---gagtaaaggctttaaacatttcctacatttcct 7737178  T
Q  498 catactattatcc------catagtcatattggttcaactcactaaaagtgtaattctcctacactgtcagtttcaaattcagtggatgaaaatttaatc 591  Q
    |||||||||||||      |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||| ||||||    
T  7737179 catactattatcccatagacatagtgatattggttcaactcactaaaagtgtaattctcctacactgtcagttt--aattccgtggatgaaaacttaatc 7737276  T
Q  592 cagctcactaaatgtaaaaactcttcaaa 620  Q
    |||||||||||||||||||||||||||||    
T  7737277 cagctcactaaatgtaaaaactcttcaaa 7737305  T

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