View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5352-Insertion-4 (Length: 311)

Name: NF5352-Insertion-4
Description: NF5352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5352-Insertion-4
NF5352-Insertion-4
[»] chr4 (1 HSPs)
chr4 (20-311)||(46910606-46910897)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 46910897 - 46910606
Alignment:
Q  20 gaatatatatagattttcaagaatcattcatgaaaaagaatcttatatacacctgattgctagagatgctagaaagaggcatgttgatgtccatacagac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46910897 gaatatatatagattttcaagaatcattcatgaaaaagaatcttatatacacctgattgctagagatgctagaaagaggcatgttgatgtccatacagac 46910798  T
Q  120 gctgaatcatcctcaatttctgtttggtgttgcctttagaaacagaactcagactcaatacagaacaagatcatcaaattcaagtatatcctcagttttt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46910797 gctgaatcatcctcaatttctgtttggtgttgcctttagaaacagaactcagactcaatacagaacaagatcatcaaattcaagtatatcttcagttttt 46910698  T
Q  220 cttactgatgagagtggaaactacgaggaaccaggcaatggtacttccctgatgagaggtcacatatcttccgcatcatgcatcaaactaag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46910697 cttactgatgagagtggaaactacgaggaaccaggcaatggtacttccctgatgagaggtcacatatcttccgcatcatgcatcaaactaag 46910606  T

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