View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5352-Insertion-5 (Length: 277)
Name: NF5352-Insertion-5
Description: NF5352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5352-Insertion-5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 4035229 - 4035120
Alignment:
| Q |
168 |
ggtttgcgaagtgaagtgagaagtgatttgagtttataaaagtgaagggacccacattggctcccgtaattgtcggctggccggcaccactacaatacta |
267 |
Q |
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| T |
4035229 |
ggtttgcgaagtgaagtgagaagtgatttgagtttataaaagtgaagggacccacattggctcccgtaattgtcggctggccggcaccactacaatacta |
4035130 |
T |
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| Q |
268 |
ctactaccac |
277 |
Q |
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| T |
4035129 |
ctactaccac |
4035120 |
T |
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Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 4035389 - 4035293
Alignment:
| Q |
8 |
ccaaacacgcgttttcttccacggatcgcgaatctcagcggcgtagcgtccccatggtcgcttcctaacacctctgtagtgtccttcacgattcgct |
104 |
Q |
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| T |
4035389 |
ccaaacacgcgttttcttccacggatcgcgaatctcagcggcgtagcgtccccatggtcgcttcctaacacctctgtagtgtccttcacgattcgct |
4035293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 36710062 - 36710131
Alignment:
| Q |
7 |
accaaacacgcgttttcttccacggatcgcgaatctcagcggcgtagcgtccccatggtcgcttcctaac |
76 |
Q |
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| T |
36710062 |
accatacacgggttttcttccagggatctctaatctcagcagcgaatcgaccccatggtcgctttctaac |
36710131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 30412916 - 30412956
Alignment:
| Q |
30 |
ggatcgcgaatctcagcggcgtagcgtccccatggtcgctt |
70 |
Q |
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| T |
30412916 |
ggatcgcgaatctcggcggcgtaacggccccatggtcgctt |
30412956 |
T |
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