View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5352_high_2 (Length: 600)

Name: NF5352_high_2
Description: NF5352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5352_high_2
NF5352_high_2
[»] chr3 (11 HSPs)
chr3 (179-580)||(34729341-34729743)
chr3 (20-108)||(34729181-34729270)
chr3 (242-370)||(3537082-3537210)
chr3 (293-367)||(18257802-18257876)
chr3 (289-369)||(49183567-49183647)
chr3 (289-369)||(51684499-51684579)
chr3 (30-108)||(3537354-3537435)
chr3 (296-369)||(47789579-47789652)
chr3 (321-370)||(48657142-48657191)
chr3 (243-327)||(5939861-5939945)
chr3 (293-369)||(53620164-53620240)
[»] chr4 (13 HSPs)
chr4 (242-369)||(52636636-52636763)
chr4 (242-369)||(38136913-38137040)
chr4 (279-369)||(33500395-33500485)
chr4 (279-369)||(56426824-56426914)
chr4 (289-375)||(49668229-49668315)
chr4 (48-85)||(30307540-30307577)
chr4 (296-369)||(38365904-38365977)
chr4 (242-369)||(30198850-30198977)
chr4 (296-369)||(7182324-7182397)
chr4 (279-368)||(16422795-16422883)
chr4 (283-368)||(32866848-32866933)
chr4 (336-369)||(35959073-35959106)
chr4 (68-108)||(42759544-42759585)
[»] chr2 (13 HSPs)
chr2 (240-369)||(4003303-4003432)
chr2 (242-369)||(11514919-11515046)
chr2 (242-368)||(15555425-15555550)
chr2 (242-369)||(21625999-21626125)
chr2 (242-366)||(34757483-34757607)
chr2 (242-368)||(37194142-37194269)
chr2 (295-369)||(16519220-16519294)
chr2 (295-369)||(16625913-16625987)
chr2 (44-85)||(7367750-7367791)
chr2 (296-369)||(18780257-18780330)
chr2 (48-108)||(36030941-36031002)
chr2 (293-370)||(39180954-39181030)
chr2 (336-369)||(43572721-43572754)
[»] chr7 (10 HSPs)
chr7 (242-369)||(4058218-4058345)
chr7 (242-369)||(16805646-16805773)
chr7 (242-369)||(38505413-38505540)
chr7 (242-368)||(15749028-15749154)
chr7 (289-370)||(32650506-32650587)
chr7 (289-369)||(30080847-30080927)
chr7 (55-108)||(38505223-38505277)
chr7 (240-365)||(43741586-43741709)
chr7 (336-369)||(41471380-41471413)
chr7 (336-368)||(19791563-19791595)
[»] chr1 (18 HSPs)
chr1 (242-369)||(27255084-27255211)
chr1 (289-369)||(36886745-36886825)
chr1 (44-88)||(36887038-36887082)
chr1 (242-369)||(29091962-29092088)
chr1 (44-85)||(6570643-6570684)
chr1 (296-369)||(7401660-7401733)
chr1 (336-369)||(17556543-17556576)
chr1 (296-369)||(40707331-40707404)
chr1 (296-369)||(43572084-43572157)
chr1 (336-369)||(45565356-45565389)
chr1 (242-327)||(46001484-46001568)
chr1 (60-108)||(50476676-50476725)
chr1 (336-369)||(52073621-52073654)
chr1 (528-564)||(13025757-13025793)
chr1 (44-88)||(38795280-38795324)
chr1 (293-369)||(38795459-38795535)
chr1 (56-88)||(43530178-43530210)
chr1 (56-88)||(50587202-50587234)
[»] chr6 (4 HSPs)
chr6 (242-368)||(1567157-1567283)
chr6 (295-369)||(26713738-26713812)
chr6 (336-369)||(32719548-32719581)
chr6 (289-369)||(12779392-12779471)
[»] chr5 (6 HSPs)
chr5 (242-369)||(35683552-35683679)
chr5 (58-88)||(12656243-12656273)
chr5 (336-369)||(1935237-1935270)
chr5 (336-369)||(13569264-13569297)
chr5 (336-369)||(32824538-32824571)
chr5 (311-368)||(29709417-29709476)
[»] scaffold0248 (1 HSPs)
scaffold0248 (233-375)||(266-408)
[»] chr8 (8 HSPs)
chr8 (46-108)||(37388427-37388490)
chr8 (301-369)||(3635614-3635682)
chr8 (44-88)||(29584343-29584387)
chr8 (294-370)||(31149798-31149874)
chr8 (336-369)||(79787-79820)
chr8 (296-369)||(3404706-3404779)
chr8 (26-88)||(43239895-43239959)
chr8 (284-368)||(6943554-6943638)
[»] scaffold1163 (1 HSPs)
scaffold1163 (289-369)||(1933-2013)
[»] scaffold0388 (1 HSPs)
scaffold0388 (336-370)||(6939-6973)
[»] scaffold1763 (1 HSPs)
scaffold1763 (56-108)||(484-537)
[»] scaffold0263 (1 HSPs)
scaffold0263 (44-93)||(5853-5902)
[»] scaffold0051 (2 HSPs)
scaffold0051 (336-369)||(6931-6964)
scaffold0051 (336-369)||(7914-7947)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-169; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 179 - 580
Target Start/End: Original strand, 34729341 - 34729743
Alignment:
Q  179 gaattcatttaaaccctcaaaacctgctccagtatagattttgaattctcgtagataaggtgagttttatattgtgaagaaaaattaaacaccaaaaaca 278  Q
    |||||||| |||||||||||||||||||||| || || ||||||||||||| |||| ||| |||||||||| |||||||||||||||| |||||||||||    
T  34729341 gaattcatataaaccctcaaaacctgctccaatacagtttttgaattctcgcagatgaggagagttttatactgtgaagaaaaattaaccaccaaaaaca 34729440  T
Q  279 ctcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagtgttaagga 378  Q
    |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34729441 ctcctcttcaattttcctgtacttcttccacttgctcattttttttttcaaaaattctcccctcccttcacctccaaactcgcaaacaaagtgttaagga 34729540  T
Q  379 atttctataaaactcaagggttgtacttgtttcatggtttc-nnnnnnntcccgatttaagttttccttgcaatcttattttcgtgaatattatttcaca 477  Q
    |||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34729541 atttctataaaactcaagggttgtgcttgtttcatggtttcaaaaaaaatcccgatttaagttttccttgcaatcttattttcgtgaatattatttcaca 34729640  T
Q  478 aatgtgcttgccaaaattcctaaacattaatctctttagtttgactgttgaacttgaaagttatttgaggtatcgactaatagctctcaacaacgaatct 577  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34729641 aatgtgcttgccaaaattcataaacattgatctttttagtttgactgtttaacttgaaagttatttgaggtatcgactaatagctctcaacaacgaatct 34729740  T
Q  578 cgt 580  Q
    |||    
T  34729741 cgt 34729743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 34729181 - 34729270
Alignment:
Q  20 agagaagaatggaaggctttggg-ttggaaaatacaagggaaaatggagaaatctttcacattttttaaagagtaaattttaagagaatg 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34729181 agagaagaatggaaggctttggggttggaaaatacaagggaaaatggagaaatttttcacattttttaaagagtaaattttaagagaatg 34729270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 370
Target Start/End: Complemental strand, 3537210 - 3537082
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||| | || ||| | |||| || | ||||||||||| ||||||||| | |||||| |||||||| |||    ||||||    
T  3537210 gttttgtattatgaagaaaagttaacctcccaaagccctcccctcccattttcctctatttcttccacttactcattccttttttctaaagccttcccct 3537111  T
Q  342 cccttcacctccaaactcgcaaacaaagt 370  Q
    |||||| ||||||||||||||||||||||    
T  3537110 cccttcccctccaaactcgcaaacaaagt 3537082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 367
Target Start/End: Original strand, 18257802 - 18257876
Alignment:
Q  293 tcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaa 367  Q
    ||||||| ||||||||  || ||||||| |||||| |||| | |||||||| ||| |||||||||||||||||||    
T  18257802 tcctctatttcttccatttgttcatttcctttttccaaaactctcccctcctttcccctccaaactcgcaaacaa 18257876  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 49183647 - 49183567
Alignment:
Q  289 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||| ||||| ||||||||| |||||||| ||||||||  |||   |||||||| ||| ||||||||||| |||||||||    
T  49183647 atttttctctatttcttccacttgctcattccttttttcccaaaccttcccctccattcccctccaaactcacaaacaaag 49183567  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 51684579 - 51684499
Alignment:
Q  289 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||||||||| ||||||||| || ||||| ||||||||  || |  ||||||| |||| |||||||||||||||| ||||    
T  51684579 attttcctctatttcttccacttgttcattccttttttcccaagtcttcccctctcttcccctccaaactcgcaaataaag 51684499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 3537435 - 3537354
Alignment:
Q  30 ggaaggctttg--ggttggaaaatacaagggaaaatggagaaatctttcacatttttt-aaagagtaaattttaagagaatg 108  Q
    |||||||||||  || |||||||||  |||||||||| |||||||||||| ||||||| ||||||||  |||| ||||||||    
T  3537435 ggaaggctttgaggggtggaaaatatgagggaaaatgaagaaatctttcaaattttttaaaagagtagttttttagagaatg 3537354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 47789579 - 47789652
Alignment:
Q  296 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||| ||||||||| ||||| || |||||||| | ||   |||||||||||| ||||||||||| |||||||||    
T  47789579 tctatttcttccacttgctccttccttttttctacaaccctcccctcccttcccctccaaactcccaaacaaag 47789652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 48657142 - 48657191
Alignment:
Q  321 ttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagt 370  Q
    ||||||| ||| |||||| |||||||||| |||||||||||||| |||||    
T  48657142 ttttttccaaagttatcctctcccttcacatccaaactcgcaaataaagt 48657191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 5939861 - 5939945
Alignment:
Q  243 ttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttc 327  Q
    |||| |||| ||||||||| |||| | || |||||  || ||| | ||||||||||| ||||||||| |||||||| ||||||||    
T  5939861 ttttgtattatgaagaaaagttaaccccccaaaaccttcatctcccattttcctctatttcttccacttgctcattccttttttc 5939945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 53620240 - 53620164
Alignment:
Q  293 tcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||||| |||| |||| ||||| || |||||||| |||    || ||||||||| |||||||||||||||||||||    
T  53620240 tcctctatttctcccacttgctccttccttttttccaaagccctcacctcccttcccctccaaactcgcaaacaaag 53620164  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 242 - 369
Target Start/End: Complemental strand, 52636763 - 52636636
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    |||||||||| |||||||||||||| | || ||| | ||| ||||| | | | ||||| ||||||||| |||||| | |||||||| |||||| |||| |    
T  52636763 gttttatattatgaagaaaaattaaccccccaaagccctcatcttccaatgtactctatttcttccacttgctcagtccttttttccaaaattctcccat 52636664  T
Q  342 cccttcacctccaaactcgcaaacaaag 369  Q
    |||||| |||||||||||||||||||||    
T  52636663 cccttcccctccaaactcgcaaacaaag 52636636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 369
Target Start/End: Original strand, 38136913 - 38137040
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| |||| |||| |||| | || ||| | ||||||||| ||||||||||| ||||||||| | || ||| ||||||||  ||    ||||||    
T  38136913 gttttgtattatgaaaaaaagttaaccccccaaagccctcctcttccattttcctctatttcttccacttacttattccttttttctcaagccttcccct 38137012  T
Q  342 cccttcacctccaaactcgcaaacaaag 369  Q
    |||||| |||||||||||||||||||||    
T  38137013 cccttcccctccaaactcgcaaacaaag 38137040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 33500485 - 33500395
Alignment:
Q  279 ctcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||||| | ||||||||||| ||||||||| |||||||| ||||||||  ||    |||||||||||| | |||||||||||||||||||    
T  33500485 ctcctctcccattttcctctatttcttccacttgctcattccttttttctcaagccttcccctcccttcccttccaaactcgcaaacaaag 33500395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 279 - 369
Target Start/End: Original strand, 56426824 - 56426914
Alignment:
Q  279 ctcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||| |||| || |||||||| ||||||||| |||||||| |||||||  ||| |  |||||||||||||||| || ||||||||||||||    
T  56426824 ctccccttccatgttcctctatttcttccacttgctcattcctttttttcaaagtcctcccctcccttcaccttcagactcgcaaacaaag 56426914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 375
Target Start/End: Original strand, 49668229 - 49668315
Alignment:
Q  289 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagtgttaa 375  Q
    ||||| ||||| ||||||||| |||||||| ||||||||  |||   ||||||| ||||  |||||||||||||||||||| |||||    
T  49668229 atttttctctatttcttccacttgctcattccttttttctcaaaccttcccctcacttcctctccaaactcgcaaacaaagcgttaa 49668315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 30307577 - 30307540
Alignment:
Q  48 aaatacaagggaaaatggagaaatctttcacatttttt 85  Q
    |||||||||||||||| |||||||||||||||||||||    
T  30307577 aaatacaagggaaaattgagaaatctttcacatttttt 30307540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 38365977 - 38365904
Alignment:
Q  296 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||| ||||||||| ||||| || |||||||| |||| | ||||||||| || ||||||||||| |||||||||    
T  38365977 tctatttcttccacttgctccttccttttttctaaaactctcccctcccctcccctccaaactcccaaacaaag 38365904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 369
Target Start/End: Original strand, 30198850 - 30198977
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||| | || ||| | ||||||| | ||||||||||| ||||||||| | || ||| |||||||   || |  ||||||    
T  30198850 gttttgtattatgaagaaaagttaaccccccaaagccctcctctcctattttcctctatttcttccacttacttattccttttttttcaagtcttcccct 30198949  T
Q  342 cccttcacctccaaactcgcaaacaaag 369  Q
    || ||| |||| ||||||||||||||||    
T  30198950 ccattcccctctaaactcgcaaacaaag 30198977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 7182324 - 7182397
Alignment:
Q  296 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||| ||||||||| ||||| || |||||||| ||||   ||||||||| || ||||||||||| |||||||||    
T  7182324 tctatttcttccacttgctccttccttttttccaaaaccctcccctcccctcccctccaaactcccaaacaaag 7182397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 368
Target Start/End: Complemental strand, 16422883 - 16422795
Alignment:
Q  279 ctcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaa 368  Q
    |||| |||| |||||||| || ||||||||  ||||||||  ||||||| ||  || |||||||||||| ||||||||||| ||||||||    
T  16422883 ctccccttccattttcctttatttcttccagttgctcattctttttttccaagctt-tcccctcccttcccctccaaactcacaaacaaa 16422795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 368
Target Start/End: Original strand, 32866848 - 32866933
Alignment:
Q  283 tcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaa 368  Q
    ||||| ||||||||| ||||||||||| |||||| | |||||||| |||    ||||||   ||| ||||||||||||||||||||    
T  32866848 tcttccattttcctcaacttcttccacttgctcaatccttttttccaaacccctcccctttattcccctccaaactcgcaaacaaa 32866933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 35959106 - 35959073
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  35959106 tcccctcccttcccctccaaactcgcaaacaaag 35959073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 42759544 - 42759585
Alignment:
Q  68 aaatctttcacatttttt-aaagagtaaattttaagagaatg 108  Q
    |||||||||||||||||| |||||||||||||| ||||||||    
T  42759544 aaatctttcacattttttgaaagagtaaatttttagagaatg 42759585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 240 - 369
Target Start/End: Complemental strand, 4003432 - 4003303
Alignment:
Q  240 gagttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatccc 339  Q
    ||||||| |||| |||||||||||||| | || ||| | |||| || | ||||||||||| ||||||||| |||||||| |||||||| |||    ||||    
T  4003432 gagttttgtattatgaagaaaaattaaccccccaaagccctcccctcccattttcctctatttcttccacttgctcattccttttttccaaagccctccc 4003333  T
Q  340 ctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||||||  |||||||||| |||||||||    
T  4003332 ctcccttccactccaaactcacaaacaaag 4003303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 242 - 369
Target Start/End: Complemental strand, 11515046 - 11514919
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||| | || ||| | ||||||| | |||||| |||| ||||||||| |||||||| ||||||||  ||    ||||||    
T  11515046 gttttgtattatgaagaaaagttaaccccccaaagctctcctctcccattttcttctatttcttccacttgctcattccttttttcctaagccttcccct 11514947  T
Q  342 cccttcacctccaaactcgcaaacaaag 369  Q
    |||||| |||||||||||||||||||||    
T  11514946 cccttcccctccaaactcgcaaacaaag 11514919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 242 - 368
Target Start/End: Original strand, 15555425 - 15555550
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| |||||||||||||| | |||||  | ||||||| | |||||| |||| ||||||||| |||||||| ||||||||  || |  ||||||    
T  15555425 gttttgtattatgaagaaaaattaacccccaaagcc-ctcctctcccattttcttctatttcttccacttgctcattccttttttcctaagtcttcccct 15555523  T
Q  342 cccttcacctccaaactcgcaaacaaa 368  Q
    |||||  ||||||||||||||||||||    
T  15555524 ccctttccctccaaactcgcaaacaaa 15555550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 369
Target Start/End: Complemental strand, 21626125 - 21625999
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||| | || ||| ||||||| ||| ||||||||||| |||||| || |||||||| |||||||   ||||  ||||||    
T  21626125 gttttgtattatgaagaaaagttaaccccccaaagcactcct-ttccattttcctctatttcttctacttgctcattcctttttttccaaatcttcccct 21626027  T
Q  342 cccttcacctccaaactcgcaaacaaag 369  Q
    || ||| |||||||| ||||||||||||    
T  21626026 ccattcccctccaaattcgcaaacaaag 21625999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 366
Target Start/End: Complemental strand, 34757607 - 34757483
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||  |||| | || ||| | ||||||| | ||||| ||||| ||||| |||||||||||| ||||||||  |||   ||||||    
T  34757607 gttttgtattatgaagaaaggttaaccccccaaagccctcctctcccatttttctctatttctttcacctgctcattccttttttcccaaaccttcccct 34757508  T
Q  342 cccttcacctccaaactcgcaaaca 366  Q
    |||||| |||||||| |||||||||    
T  34757507 cccttcccctccaaattcgcaaaca 34757483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 368
Target Start/End: Complemental strand, 37194269 - 37194142
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttctttttt-caaaaattatcccc 340  Q
    ||||| |||| ||||||||| |||| | || ||| | ||| ||||| ||||||||||| ||||||||| | || ||| ||||||| |  || |  |||||    
T  37194269 gttttgtattatgaagaaaagttaaccccccaaagccctcgtcttccattttcctctatttcttccacttacttattcctttttttctcaagtcttcccc 37194170  T
Q  341 tcccttcacctccaaactcgcaaacaaa 368  Q
    ||||||| ||||||||||||||||||||    
T  37194169 tcccttcccctccaaactcgcaaacaaa 37194142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 16519220 - 16519294
Alignment:
Q  295 ctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||| ||||||||| ||||| || |||||||| ||||   ||||||| |||| |||||||||||||||||||||    
T  16519220 ctctatttcttccacttgctccttccttttttccaaaaccctcccctctcttcccctccaaactcgcaaacaaag 16519294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 16625913 - 16625987
Alignment:
Q  295 ctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||| ||||||||| |||||  | |||||||| ||||   |||||||||||| |||||||||||||||||||||    
T  16625913 ctctatttcttccacttgctccatccttttttccaaaaccctcccctcccttcccctccaaactcgcaaacaaag 16625987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 7367791 - 7367750
Alignment:
Q  44 tggaaaatacaagggaaaatggagaaatctttcacatttttt 85  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  7367791 tggaaaatatgagggaaaatgaagaaatctttcacatttttt 7367750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 18780330 - 18780257
Alignment:
Q  296 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||| ||||||||| ||||| || |||||||| ||||   ||||||||| || ||||||||||| |||||||||    
T  18780330 tctatttcttccacgtgctccttccttttttccaaaaccctcccctcccctcccctccaaactcccaaacaaag 18780257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 36031002 - 36030941
Alignment:
Q  48 aaatacaagggaaaatggagaaatctttcacattttt-taaagagtaaattttaagagaatg 108  Q
    ||||||| || ||||||||||||||||||||||||||  ||||||||  |||| ||||||||    
T  36031002 aaatacagggaaaaatggagaaatctttcacatttttggaaagagtatttttttagagaatg 36030941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 39181030 - 39180954
Alignment:
Q  293 tcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagt 370  Q
    ||||||| ||||||||| | ||| || |||||||| ||| |  ||||||||||||  |||||||||||||||||||||    
T  39181030 tcctctatttcttccacttactccttccttttttccaaa-tcctcccctcccttcctctccaaactcgcaaacaaagt 39180954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 43572721 - 43572754
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  43572721 tcccctcccttcccctccaaactcgcaaacaaag 43572754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 242 - 369
Target Start/End: Original strand, 4058218 - 4058345
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||| | || ||| | ||| ||||| ||||||||||| ||||||||| | || |||| |||||||  || |  ||||||    
T  4058218 gttttgtattatgaagaaaagttaaccccccaaagccctcatcttccattttcctctatttcttccacttacttattttttttttcccaagtcttcccct 4058317  T
Q  342 cccttcacctccaaactcgcaaacaaag 369  Q
    |||||| |||||||||||||||||||||    
T  4058318 cccttcccctccaaactcgcaaacaaag 4058345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 242 - 369
Target Start/End: Original strand, 16805646 - 16805773
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||||| || ||| | ||||||| | ||||||||||  ||||||||| | || ||| ||||||||  || |  ||||||    
T  16805646 gttttgtattatgaagaaaagttaaacccccaaagccctcctctcccattttcctctctttcttccacttacttattccttttttcccaagtcttcccct 16805745  T
Q  342 cccttcacctccaaactcgcaaacaaag 369  Q
    |||||| |||||||||||||||||||||    
T  16805746 cccttcccctccaaactcgcaaacaaag 16805773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 242 - 369
Target Start/End: Original strand, 38505413 - 38505540
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||| | || ||| | |||| || | ||||||||||| ||||||||| |||||||| ||||||||  ||    ||||||    
T  38505413 gttttgtattatgaagaaaagttaaccccccaaagccctcccctcccattttcctctatttcttccacttgctcattccttttttcccaagccttcccct 38505512  T
Q  342 cccttcacctccaaactcgcaaacaaag 369  Q
    |||||| |||||||||||||||||||||    
T  38505513 cccttcccctccaaactcgcaaacaaag 38505540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 242 - 368
Target Start/End: Original strand, 15749028 - 15749154
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||| | || ||| | ||||||| | |||||| |||| ||||||||| |||||||| ||||||||  ||    ||||||    
T  15749028 gttttgtattatgaagaaaagttaaccccccaaagctctcctctcccattttcttctatttcttccacttgctcattccttttttcctaagccttcccct 15749127  T
Q  342 cccttcacctccaaactcgcaaacaaa 368  Q
    |||||| ||||||||||||||||||||    
T  15749128 cccttcccctccaaactcgcaaacaaa 15749154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 32650506 - 32650587
Alignment:
Q  289 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagt 370  Q
    ||||||||||| ||||||||| ||||||||  |||||||  ||| | || |||| |||| ||||||||||||||||||||||    
T  32650506 attttcctctatttcttccacttgctcattctttttttcccaaactttctcctctcttcccctccaaactcgcaaacaaagt 32650587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 30080927 - 30080847
Alignment:
Q  289 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||||||||| ||||||||| ||||| || ||||||||  || |  |||||||||||| ||| |||||||||||| ||||    
T  30080927 attttcctctatttcttccacttgctccttccttttttctcaagtcttcccctcccttctcctacaaactcgcaaataaag 30080847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 38505223 - 38505277
Alignment:
Q  55 agggaaaatggagaaatctttcacatttttt-aaagagtaaattttaagagaatg 108  Q
    ||||||||||||||||||||||| ||||||| ||||||||  |||| ||||||||    
T  38505223 agggaaaatggagaaatctttcaaattttttaaaagagtagttttttagagaatg 38505277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 365
Target Start/End: Complemental strand, 43741709 - 43741586
Alignment:
Q  240 gagttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatccc 339  Q
    ||||||| |||| ||||||||| |||| |||  ||||| |||| || | ||||||||||| ||||| ||| |||||||| ||||||||  ||    ||||    
T  43741709 gagttttgtattatgaagaaaagttaaccac--aaaaccctcccctcccattttcctctatttctttcacttgctcattccttttttctcaagccttccc 43741612  T
Q  340 ctcccttcacctccaaactcgcaaac 365  Q
    ||| |||| |||||||||| ||||||    
T  43741611 ctcacttcccctccaaacttgcaaac 43741586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 41471413 - 41471380
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  41471413 tcccctcccttctcctccaaactcgcaaacaaag 41471380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 19791595 - 19791563
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaa 368  Q
    |||||||||||| ||||||||||||||||||||    
T  19791595 tcccctcccttcccctccaaactcgcaaacaaa 19791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 242 - 369
Target Start/End: Complemental strand, 27255211 - 27255084
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||| | || ||| | ||||||| | ||||||||||| ||||||||| |||||||| ||||||||  || |  ||||||    
T  27255211 gttttgtattatgaagaaaagttaacctcccaaagccctcctctcccattttcctctatttcttccacttgctcattccttttttctcaagtcttcccct 27255112  T
Q  342 cccttcacctccaaactcgcaaacaaag 369  Q
      |||| |||||||||||||||||||||    
T  27255111 ttcttcccctccaaactcgcaaacaaag 27255084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 36886825 - 36886745
Alignment:
Q  289 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||||||||| ||||||||| |||||||| ||||||||  ||    |||||||||||| |||||||||||||||||||||    
T  36886825 attttcctctatttcttccacttgctcattccttttttcccaagccttcccctcccttcccctccaaactcgcaaacaaag 36886745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 36887082 - 36887038
Alignment:
Q  44 tggaaaatacaagggaaaatggagaaatctttcacattttttaaa 88  Q
    |||||||||| |||||||||| |||||||||||| ||||||||||    
T  36887082 tggaaaatacgagggaaaatgaagaaatctttcaaattttttaaa 36887038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 369
Target Start/End: Complemental strand, 29092088 - 29091962
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||| | |||||  | ||||||| | ||||||||||| ||||||||| | || |||  |||||||  |||   ||||||    
T  29092088 gttttgtattatgaagaaaagttaacccccaaagcc-ctcctctcccattttcctctatttcttccacttacttattcattttttcccaaaccttcccct 29091990  T
Q  342 cccttcacctccaaactcgcaaacaaag 369  Q
    ||||||  ||||||||||||||||||||    
T  29091989 cccttcctctccaaactcgcaaacaaag 29091962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 6570684 - 6570643
Alignment:
Q  44 tggaaaatacaagggaaaatggagaaatctttcacatttttt 85  Q
    ||||||||| |||||||||| ||||||| |||||||||||||    
T  6570684 tggaaaataaaagggaaaatagagaaatttttcacatttttt 6570643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 7401660 - 7401733
Alignment:
Q  296 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||| ||||||||||||||| || |||||||| ||||   ||||||||| || | ||||||||| |||||||||    
T  7401660 tctatttcttccacctgctccttccttttttctaaaaccctcccctcccctcccttccaaactcccaaacaaag 7401733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 17556576 - 17556543
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  17556576 tcccctcccttcccctccaaactcgcaaacaaag 17556543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 40707331 - 40707404
Alignment:
Q  296 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||| ||||||||| ||||| || |||||||| |||| | | ||||| |||| ||||||||||| |||||||||    
T  40707331 tctatttcttccacttgctccttccttttttccaaaactcttccctctcttcccctccaaactcccaaacaaag 40707404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 43572084 - 43572157
Alignment:
Q  296 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||| ||||||||| |||||||| |||||||  |||| | | ||||||| || ||||||||||| |||||||||    
T  43572084 tctatttcttccacttgctcattcctttttttcaaaactctgccctcccctcccctccaaactcccaaacaaag 43572157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 45565356 - 45565389
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  45565356 tcccctcccttcccctccaaactcgcaaacaaag 45565389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 46001568 - 46001484
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttc 327  Q
    |||||||||| ||||||||| |||| | |||||| | ||||||| | ||||||||||| ||||||||| | || ||| ||||||||    
T  46001568 gttttatattatgaagaaaagttaacctccaaaacc-ctcctctcccattttcctctatttcttccacttacttattccttttttc 46001484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 50476725 - 50476676
Alignment:
Q  60 aaatggagaaatctttcacatttttt-aaagagtaaattttaagagaatg 108  Q
    |||||||||||||||||||||||||| |||||| || |||||||| ||||    
T  50476725 aaatggagaaatctttcacattttttgaaagagcaatttttaagataatg 50476676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 52073621 - 52073654
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  52073621 tcccctcccttcccctccaaactcgcaaacaaag 52073654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 564
Target Start/End: Original strand, 13025757 - 13025793
Alignment:
Q  528 aacttgaaagttatttgaggtatcgactaatagctct 564  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  13025757 aacttgaaagttatttgatgtatcaactaatagctct 13025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 38795280 - 38795324
Alignment:
Q  44 tggaaaatacaagggaaaatggagaaatctttcacattttttaaa 88  Q
    |||||||||  |||||||||| |||||||||||| ||||||||||    
T  38795280 tggaaaatatgagggaaaatgaagaaatctttcaaattttttaaa 38795324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 38795459 - 38795535
Alignment:
Q  293 tcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||||| ||||||||| |||||||| ||||||||  || |  |||| | ||||| |||| ||||||||||||||||    
T  38795459 tcctctatttcttccacttgctcattccttttttctcaagtcttccctttccttctcctctaaactcgcaaacaaag 38795535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 43530178 - 43530210
Alignment:
Q  56 gggaaaatggagaaatctttcacattttttaaa 88  Q
    |||||||| ||||||||||||||||||||||||    
T  43530178 gggaaaattgagaaatctttcacattttttaaa 43530210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 50587234 - 50587202
Alignment:
Q  56 gggaaaatggagaaatctttcacattttttaaa 88  Q
    ||||||||||||||||||| |||||||||||||    
T  50587234 gggaaaatggagaaatcttacacattttttaaa 50587202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 242 - 368
Target Start/End: Complemental strand, 1567283 - 1567157
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||| | || ||| | ||||||| | |||||| |||| ||||||||| |||||||| ||||||||  ||    ||||||    
T  1567283 gttttgtattatgaagaaaagttaaccccccaaagctctcctctcccattttcttctatttcttccacttgctcattccttttttcctaagccttcccct 1567184  T
Q  342 cccttcacctccaaactcgcaaacaaa 368  Q
    |||||| ||||||||||||||||||||    
T  1567183 cccttcccctccaaactcgcaaacaaa 1567157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 26713812 - 26713738
Alignment:
Q  295 ctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||| ||||||||| ||||| || |||| ||| ||||   |||||||||||| |||||||||||||||||||||    
T  26713812 ctctatttcttccacttgctccttcctttattccaaaaccctcccctcccttcccctccaaactcgcaaacaaag 26713738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 32719548 - 32719581
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  32719548 tcccctcccttcccctccaaactcgcaaacaaag 32719581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 12779471 - 12779392
Alignment:
Q  289 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||||||||| || ||| || |||||||| |||||||   |||   |||||||||||||||||| |||||||||||||||    
T  12779471 attttcctctatttattctacttgctcattcctttttttccaaaccttcccctcccttcacctcc-aactcgcaaacaaag 12779392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 369
Target Start/End: Original strand, 35683552 - 35683679
Alignment:
Q  242 gttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccct 341  Q
    ||||| |||| ||||||||| |||| | ||  || | ||||||| | |||||| |||| ||||||||| |||||||| ||||||||  |||   ||||||    
T  35683552 gttttgtattatgaagaaaagttaaccccccgaagccctcctctcccattttcttctatttcttccacttgctcattccttttttcctaaaccttcccct 35683651  T
Q  342 cccttcacctccaaactcgcaaacaaag 369  Q
    |||||| ||| |||||||||||||||||    
T  35683652 cccttccccttcaaactcgcaaacaaag 35683679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 88
Target Start/End: Original strand, 12656243 - 12656273
Alignment:
Q  58 gaaaatggagaaatctttcacattttttaaa 88  Q
    |||||||||||||||||||||||||||||||    
T  12656243 gaaaatggagaaatctttcacattttttaaa 12656273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 1935237 - 1935270
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  1935237 tcccctcccttcccctccaaactcgcaaacaaag 1935270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 13569297 - 13569264
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  13569297 tcccctcccttcccctccaaactcgcaaacaaag 13569264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 32824571 - 32824538
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  32824571 tcccctcccttctcctccaaactcgcaaacaaag 32824538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 29709476 - 29709417
Alignment:
Q  311 tgctcatttcttttttcaaaaattatcccc--tcccttcacctccaaactcgcaaacaaa 368  Q
    ||||| ||||||||||| |||| | |||||  ||||||| ||||||||||||||||||||    
T  29709476 tgctcctttcttttttccaaaactctcccccctcccttctcctccaaactcgcaaacaaa 29709417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 233 - 375
Target Start/End: Original strand, 266 - 408
Alignment:
Q  233 ataaggtgagttttatattgtgaagaaaaattaaacaccaaaaacactcctcttcaattttcctctacttcttccacctgctcatttcttttt-tcaaaa 331  Q
    |||||| | ||||| |||| ||||||||| |||| | |||||  | ||||||| | ||||||||||| ||||||||| |||| |||  ||||| ||  ||    
T  266 ataaggagggttttgtattatgaagaaaagttaacccccaaag-ctctcctctcccattttcctctatttcttccacttgcttattcttttttatcccaa 364  T
Q  332 attatcccctcccttcacctccaaactcgcaaacaaagtgttaa 375  Q
      | |||||||||||| ||||||||||||||||||||| |||||    
T  365 gctttcccctcccttcccctccaaactcgcaaacaaagcgttaa 408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 37388490 - 37388427
Alignment:
Q  46 gaaaatacaagggaaaatggagaaatctttcacatttttt-aaagagtaaattttaagagaatg 108  Q
    ||||||| || |||||||||  |||||||||||||||||| |||||||||||||| ||||||||    
T  37388490 gaaaatataaaggaaaatggtaaaatctttcacattttttgaaagagtaaatttttagagaatg 37388427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 3635614 - 3635682
Alignment:
Q  301 ttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    ||||| ||| ||||||||||||||||| ||||   || | ||||||| |||||||||||||||||||||    
T  3635614 ttctttcacttgctcatttcttttttccaaaaccctctcatcccttcccctccaaactcgcaaacaaag 3635682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 29584387 - 29584343
Alignment:
Q  44 tggaaaatacaagggaaaatggagaaatctttcacattttttaaa 88  Q
    |||||||||| |||||||||| |||||||||||| ||||||||||    
T  29584387 tggaaaatacgagggaaaatgaagaaatctttcaaattttttaaa 29584343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 31149874 - 31149798
Alignment:
Q  294 cctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaagt 370  Q
    |||||| ||||||||| ||||||||  | ||||| ||||   ||| |||||||| ||||||||||||||||||||||    
T  31149874 cctctatttcttccacttgctcattcatgttttccaaaacactccactcccttcccctccaaactcgcaaacaaagt 31149798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 79787 - 79820
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  79787 tcccctcccttcccctccaaactcgcaaacaaag 79820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 3404706 - 3404779
Alignment:
Q  296 tctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||| ||||||||| ||||| || |||||||| ||||   ||||||||| || ||||||||||| |||||||||    
T  3404706 tctatttcttccacttgctccttccttttttccaaaaccctcccctcccctcccctccaaactcccaaacaaag 3404779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 43239959 - 43239895
Alignment:
Q  26 gaatggaaggctttg--ggttggaaaatacaagggaaaatggagaaatctttcacattttttaaa 88  Q
    |||||||||| ||||  ||||| ||||||  |||||||||||||||||||||||  |||||||||    
T  43239959 gaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttcaatttttttaaa 43239895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 368
Target Start/End: Original strand, 6943554 - 6943638
Alignment:
Q  284 cttcaattttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaa 368  Q
    |||| ||||||||||| ||||||||  ||||||||  |||||||  ||||  ||| ||||||||  || ||||||||||||||||    
T  6943554 cttccattttcctctatttcttccaattgctcattctttttttcccaaatcttcctctcccttcctcttcaaactcgcaaacaaa 6943638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 2013 - 1933
Alignment:
Q  289 attttcctctacttcttccacctgctcatttcttttttcaaaaattatcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||| |||| ||||||||| ||||| || |||||||  ||| |  |||| ||||||| |||||||||||||||||||||    
T  2013 attttcttctatttcttccacttgctccttcctttttttcaaagtcttcccttcccttcccctccaaactcgcaaacaaag 1933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 6973 - 6939
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaagt 370  Q
    |||||||||||| ||||||||||||||||||||||    
T  6973 tcccctcccttcccctccaaactcgcaaacaaagt 6939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 484 - 537
Alignment:
Q  56 gggaaaatggagaaatctttcacatttttt-aaagagtaaattttaagagaatg 108  Q
    ||||||||||  |||| ||||||||||||| |||||||||||||| ||||||||    
T  484 gggaaaatggtaaaatatttcacattttttgaaagagtaaatttttagagaatg 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 5853 - 5902
Alignment:
Q  44 tggaaaatacaagggaaaatggagaaatctttcacattttttaaagagta 93  Q
    |||||||||  ||||||||||||||||||||| | | |||||||||||||    
T  5853 tggaaaatatgagggaaaatggagaaatcttttaaaatttttaaagagta 5902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 6931 - 6964
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  6931 tcccctcccttcccctccaaactcgcaaacaaag 6964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 7914 - 7947
Alignment:
Q  336 tcccctcccttcacctccaaactcgcaaacaaag 369  Q
    |||||||||||| |||||||||||||||||||||    
T  7914 tcccctcccttcccctccaaactcgcaaacaaag 7947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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