View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5352_low_1 (Length: 669)

Name: NF5352_low_1
Description: NF5352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5352_low_1
NF5352_low_1
[»] chr1 (7 HSPs)
chr1 (130-652)||(29126787-29127310)
chr1 (11-143)||(29127667-29127811)
chr1 (11-148)||(29127335-29127487)
chr1 (260-317)||(39567319-39567376)
chr1 (114-161)||(29230060-29230107)
chr1 (116-148)||(4769327-4769359)
chr1 (132-164)||(50608269-50608301)
[»] chr4 (6 HSPs)
chr4 (234-341)||(49755869-49755976)
chr4 (110-156)||(32369925-32369971)
chr4 (112-164)||(34589721-34589773)
chr4 (112-154)||(31277039-31277081)
chr4 (112-165)||(37496695-37496748)
chr4 (112-156)||(18513256-18513300)
[»] chr6 (3 HSPs)
chr6 (112-161)||(34625729-34625778)
chr6 (112-157)||(34598537-34598582)
chr6 (116-156)||(17422274-17422314)
[»] chr8 (2 HSPs)
chr8 (115-157)||(2517106-2517148)
chr8 (112-157)||(34863480-34863525)
[»] chr7 (2 HSPs)
chr7 (112-158)||(38134421-38134467)
chr7 (112-164)||(35238199-35238251)
[»] chr5 (2 HSPs)
chr5 (114-143)||(465600-465629)
chr5 (112-165)||(9878047-9878100)
[»] chr3 (2 HSPs)
chr3 (112-156)||(25074789-25074833)
chr3 (112-148)||(49636841-49636877)


Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 130 - 652
Target Start/End: Complemental strand, 29127310 - 29126787
Alignment:
Q  130 tcattttctcaaatgattatcggtgtcaatgtgtca-tgcttcatacaacaaattcaaatggaagcatgtagataaataaataaacaagaaagaatggnn 228  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||      
T  29127310 tcattttctcaaatgattatcggtgtcaacgtgtcagtgcttcatacaacaaattcaaatggaagcatgtatataaataaataaacaacaaagaatggaa 29127211  T
Q  229 nnnnnggatatgattgtctttatagggttatacttataatgaacaggtgaagcaggacaggcaagatgatagatctgatcaacctcaagcaaaatcggat 328  Q
         ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29127210 aaaaaggatatgattgtcttgatagggttatacttataatgaacaggtgaagcaggacaggcaagatgatagatctgatcaacctcaagcaaaatcggat 29127111  T
Q  329 caacaacatcatgacgaattaactcaaacctagggttcccaaacaaatgaaccaaattctctttcctaccagtnnnnnnnttatcaataacaataacatc 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  29127110 caacaacatcatgacgaattaactcaaacctagggttcccaaacaaatgaaccaaattctctttcctaccagtaaaaaaattatcaataacaataacatc 29127011  T
Q  429 attccctctaccaatcaacttatcaaccaaatgacttccaacaaaaccagcaccaccggtaaccaccactctcaacctccgaccaccaatacccgccgga 528  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29127010 attccctctaccaatcaacttatcaaccagatgacttccaacaaaaccagcaccaccggtaaccaccactctcaacctccgaccaccaattcccgccgga 29126911  T
Q  529 atccgccccactctaagggatgcaccctcgttgccggtgttgaaccggaccaacccagatctaggtaaaaacgaaccggcctccggtggacttatgcgtg 628  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29126910 atccgccccactctaagggatgcaccctcgttgccggtgttgaaccggaccaacccagatctaggtaaaaacaaaccggcctccggtggacttatgcgtg 29126811  T
Q  629 aaagcgtgggttgaatgatgaaga 652  Q
    ||||||||||||||||||||||||    
T  29126810 aaagcgtgggttgaatgatgaaga 29126787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 29127811 - 29127667
Alignment:
Q  11 atcatcaatcacataataaagtcaaggatcccaaaatccaaacacaaaattcaaatttccaagcaaccattaaacaaca---acaaatgccctaacacca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  29127811 atcatcaatcacataataaagtcaaggatcccaaaatccaaacacaaaattcaaatttccaagcaaccattaaacaacaacaacaaatgccctaacacca 29127712  T
Q  108 aca---------ttgattacattcaattaactcattttctcaaat 143  Q
    |||         |||||||||||||||||||||||||||||||||    
T  29127711 acattgacacatttgattacattcaattaactcattttctcaaat 29127667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 29127487 - 29127335
Alignment:
Q  11 atcatcaatcacataataaagtcaaggatcccaaaatccaaacacaaaattcaaatttccaagcaaccattaaacaac------aacaaatgccctaaca 104  Q
    |||| ||||||||||||||||| |||||||| ||||||||| |||||||||  || |||||| |||||||| ||||||      |||||||| |||||||    
T  29127487 atcaccaatcacataataaagtgaaggatccaaaaatccaatcacaaaattagaaattccaaacaaccattgaacaactacaaaaacaaatgtcctaaca 29127388  T
Q  105 ccaacatt---------gattacattcaattaactcattttctcaaatgatta 148  Q
    |||||| |         |||||||||||||||||||||| |||||||| ||||    
T  29127387 ccaacactgacacatacgattacattcaattaactcattatctcaaatcatta 29127335  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 39567319 - 39567376
Alignment:
Q  260 acttataatgaacaggtgaagcaggacaggcaagatgatagatctgatcaacctcaag 317  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  39567319 acttgtaatgaacaggagaagcaggacaagcaagatgatagatctgatcaacttcaag 39567376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 29230107 - 29230060
Alignment:
Q  114 attacattcaattaactcattttctcaaatgattatcggtgtcaatgt 161  Q
    ||||||||||||||  |||||||||||||| |||| ||||||||||||    
T  29230107 attacattcaattatgtcattttctcaaattattaccggtgtcaatgt 29230060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 4769327 - 4769359
Alignment:
Q  116 tacattcaattaactcattttctcaaatgatta 148  Q
    |||||||||||||||||||||||||||| ||||    
T  4769327 tacattcaattaactcattttctcaaattatta 4769359  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 50608269 - 50608301
Alignment:
Q  132 attttctcaaatgattatcggtgtcaatgtgtc 164  Q
    |||||||||||| ||||||||||||||||||||    
T  50608269 attttctcaaattattatcggtgtcaatgtgtc 50608301  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 49755976 - 49755869
Alignment:
Q  234 ggatatgattgtctttatagggttatacttataatgaacaggtgaagcaggacaggcaagatgatagatctgatcaacctcaagcaaaatcggatcaaca 333  Q
    ||||||||| ||||| | ||| ||| |||| ||||||||||| |||||||| || || |  ||||||||||||||||| ||||| | ||| || ||||||    
T  49755976 ggatatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatagatctgatcaacttcaagaagaataggttcaaca 49755877  T
Q  334 acatcatg 341  Q
    ||||||||    
T  49755876 acatcatg 49755869  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 32369925 - 32369971
Alignment:
Q  110 attgattacattcaattaactcattttctcaaatgattatcggtgtc 156  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||    
T  32369925 attgattacattcaattaattcattttctcaaattattatcggtgtc 32369971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 34589721 - 34589773
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgattatcggtgtcaatgtgtc 164  Q
    |||||||||| |||||  ||||||||||||||  |||||||||||||||||||    
T  34589721 tgattacattgaattatgtcattttctcaaattgttatcggtgtcaatgtgtc 34589773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 31277039 - 31277081
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgattatcggtg 154  Q
    ||||||||||||||||  |||||||||||||| ||||||||||    
T  31277039 tgattacattcaattagttcattttctcaaattattatcggtg 31277081  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 37496748 - 37496695
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgattatcggtgtcaatgtgtca 165  Q
    |||||||||| |||||  |||||||||||||  |||||||||||||| ||||||    
T  37496748 tgattacattgaattatgtcattttctcaaaaaattatcggtgtcaacgtgtca 37496695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 18513256 - 18513300
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgattatcggtgtc 156  Q
    |||||||||| |||||  |||||||||||||| ||||||||||||    
T  18513256 tgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 34625778 - 34625729
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgattatcggtgtcaatgt 161  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| ||||    
T  34625778 tgattacattcaattaattcattttctcaaattattatcggtgtcgatgt 34625729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 34598582 - 34598537
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgattatcggtgtca 157  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||    
T  34598582 tgattacatccaattaattcattttctcaaattattatcggtgtca 34598537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 17422274 - 17422314
Alignment:
Q  116 tacattcaattaactcattttctcaaatgattatcggtgtc 156  Q
    ||||||||||||  |||||||||||||| ||||||||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtc 17422314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 2517148 - 2517106
Alignment:
Q  115 ttacattcaattaactcattttctcaaatgattatcggtgtca 157  Q
    |||||||||||||| |||||||||||||| |||| ||||||||    
T  2517148 ttacattcaattaattcattttctcaaattattaccggtgtca 2517106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 34863525 - 34863480
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgattatcggtgtca 157  Q
    ||||||||||||||||| ||||||| |||||| |||||| ||||||    
T  34863525 tgattacattcaattaagtcattttttcaaataattatccgtgtca 34863480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 38134421 - 38134467
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgattatcggtgtcaa 158  Q
    |||||||||| |||||  |||||||||||||| ||||||||||||||    
T  38134421 tgattacattgaattatgtcattttctcaaattattatcggtgtcaa 38134467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 35238199 - 35238251
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgattatcggtgtcaatgtgtc 164  Q
    |||||| ||| |||||  |||||||||||||  ||||||||||||||||||||    
T  35238199 tgattatattgaattatgtcattttctcaaaatattatcggtgtcaatgtgtc 35238251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 465629 - 465600
Alignment:
Q  114 attacattcaattaactcattttctcaaat 143  Q
    ||||||||||||||||||||||||||||||    
T  465629 attacattcaattaactcattttctcaaat 465600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 9878047 - 9878100
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgattatcggtgtcaatgtgtca 165  Q
    ||||||||||||||||| |||| ||||||||| ||||| |||||| | ||||||    
T  9878047 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtca 9878100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 25074833 - 25074789
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgattatcggtgtc 156  Q
    |||||||| |||||||  |||||||||||||| ||||||||||||    
T  25074833 tgattacactcaattatgtcattttctcaaattattatcggtgtc 25074789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 49636841 - 49636877
Alignment:
Q  112 tgattacattcaattaactcattttctcaaatgatta 148  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  49636841 tgattacattcaattaattcattttctcaaattatta 49636877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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