View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5352_low_10 (Length: 244)
Name: NF5352_low_10
Description: NF5352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5352_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 34353169 - 34353402
Alignment:
| Q |
11 |
atcatcattgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaa |
110 |
Q |
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| T |
34353169 |
atcatcgttgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagtggctgatacggcaggcacgaaaagcacaa |
34353268 |
T |
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| Q |
111 |
gacaaagacttgactaaggaggaagaaaccattgttgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaata |
210 |
Q |
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| T |
34353269 |
gacaaagacttcactaaggaggaagaaaccattgtcgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaata |
34353368 |
T |
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| Q |
211 |
cacaagatcgtggttgattgtgtttgtttatttt |
244 |
Q |
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| T |
34353369 |
cacaagatcgtggttgattgtgtttgtttatttt |
34353402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 34358796 - 34359027
Alignment:
| Q |
13 |
catcattgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaaga |
112 |
Q |
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|||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |
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| T |
34358796 |
catcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctggtggagctgaaacagtggctgatacggccagcacgcaaagcacaagt |
34358895 |
T |
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| Q |
113 |
caaagacttgactaaggaggaagaaaccattgttgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaataca |
212 |
Q |
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| T |
34358896 |
caaagacttgactaaggaggaagaagccattgttgtttgttgagaattctcagatcacataacattgttaaaagaagataaggtacacgcacgaaatgca |
34358995 |
T |
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| Q |
213 |
caagatcgtggttgattgtgtttgtttatttt |
244 |
Q |
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| T |
34358996 |
caagatcatggttgattgtgtttgtttatttt |
34359027 |
T |
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