View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5352_low_3 (Length: 493)

Name: NF5352_low_3
Description: NF5352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5352_low_3
NF5352_low_3
[»] chr1 (2 HSPs)
chr1 (96-244)||(7713478-7713626)
chr1 (247-312)||(7713983-7714049)
[»] chr8 (4 HSPs)
chr8 (247-317)||(11325730-11325800)
chr8 (100-242)||(40147776-40147917)
chr8 (86-171)||(9336909-9336994)
chr8 (275-317)||(12620142-12620184)
[»] chr2 (4 HSPs)
chr2 (100-244)||(35918105-35918248)
chr2 (247-317)||(35917615-35917686)
chr2 (342-405)||(35917531-35917593)
chr2 (349-405)||(9795712-9795768)
[»] scaffold0161 (1 HSPs)
scaffold0161 (204-242)||(8174-8212)
[»] scaffold0057 (1 HSPs)
scaffold0057 (6-44)||(60345-60383)
[»] chr3 (1 HSPs)
chr3 (409-443)||(30694341-30694375)
[»] chr6 (1 HSPs)
chr6 (7-44)||(15108112-15108149)
[»] chr7 (1 HSPs)
chr7 (252-311)||(42694477-42694537)


Alignment Details
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 244
Target Start/End: Original strand, 7713478 - 7713626
Alignment:
Q  96 cactttacaactttcaccactaagttacctccatttttattgatatattgttacttccaaaattgatataccgtactaaaacnnnnnnnnaaagccacaa 195  Q
    |||| ||||| |||||||||||||  || | |||||| ||||| |||||| | |||||||||||||||||  ||||||||||        ||||||||||    
T  7713478 cactatacaagtttcaccactaagccactttcattttaattgaaatattgctgcttccaaaattgatatattgtactaaaacatctttttaaagccacaa 7713577  T
Q  196 gtgccctagcggttccttttctgatagcaatttcttttcattattaaca 244  Q
     |  |||||  ||||||||||||||||||||||||||||||||||||||    
T  7713578 atatcctagaagttccttttctgatagcaatttcttttcattattaaca 7713626  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 7713983 - 7714049
Alignment:
Q  247 gaagaaattcaggaacacaactag-taatattatttggtaagaaaataaagttaatagcttaaattg 312  Q
    ||||||||||| |||||||||  | |||||||||||  |||||||||||||||||||||||||||||    
T  7713983 gaagaaattcaagaacacaaccgggtaatattatttaataagaaaataaagttaatagcttaaattg 7714049  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 11325730 - 11325800
Alignment:
Q  247 gaagaaattcaggaacacaactagtaatattatttggtaagaaaataaagttaatagcttaaattggtgta 317  Q
    |||| ||||||||||||||||  |  ||||||||||||||||||||||||||||||| |||||||||||||    
T  11325730 gaaggaattcaggaacacaacctgatatattatttggtaagaaaataaagttaatagtttaaattggtgta 11325800  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 40147917 - 40147776
Alignment:
Q  100 ttacaactttcaccactaagttacctccatttttattgatatattgttacttccaaaattgatataccgtactaaaacnnnnnnnnaaagccacaagtgc 199  Q
    ||||||||||||||| |||   || |||||||| ||||| | ||||   ||||||||||||||||||||||||||| |        |||||||||| |||    
T  40147917 ttacaactttcaccaataaacaacttccattttgattgaaa-attgcagcttccaaaattgatataccgtactaaagcctttttttaaagccacaaatgc 40147819  T
Q  200 cctagcggttccttttctgatagcaatttcttttcattattaa 242  Q
    |||  || ||||||||||||||||||||| |||||||||||||    
T  40147818 ccttacgattccttttctgatagcaatttattttcattattaa 40147776  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 9336909 - 9336994
Alignment:
Q  86 cttatgactacactttacaactttcaccactaagttacctccatttttattgatatattgttacttccaaaattgatataccgtac 171  Q
    |||||||||||||||| | ||||||||||| ||   || |||||||  ||||| |||||||| |||||||||||||||||| ||||    
T  9336909 cttatgactacacttttctactttcaccaccaacccacttccatttggattgaaatattgttgcttccaaaattgatatactgtac 9336994  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 12620142 - 12620184
Alignment:
Q  275 attatttggtaagaaaataaagttaatagcttaaattggtgta 317  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  12620142 attatttggtaaaaaaataaagtcaatagcttaaattggtgta 12620184  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 244
Target Start/End: Complemental strand, 35918248 - 35918105
Alignment:
Q  100 ttacaactttcaccactaagttacctccatttttattgatatattgttacttccaaaattgatataccgtactaaaacnnnnnnnnaaagccacaagtgc 199  Q
    |||||||||||||||||||   || |||||||| ||||| | |||||| |||||||||||||||||||||||| |||          ||| ||||| |||    
T  35918248 ttacaactttcaccactaaaccacttccattttgattgaaaaattgttgcttccaaaattgatataccgtact-aaagtttttttttaagacacaaatgc 35918150  T
Q  200 cctagcggttccttttctgatagcaatttcttttcattattaaca 244  Q
    ||||||  |||| ||| ||||||| ||||||||||||||||||||    
T  35918149 cctagcaattccatttatgatagctatttcttttcattattaaca 35918105  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 35917686 - 35917615
Alignment:
Q  247 gaagaaattcaggaacacaactag-taatattatttggtaagaaaataaagttaatagcttaaattggtgta 317  Q
    |||||||||||| ||||||||  | ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  35917686 gaagaaattcagtaacacaacctgataatattatttggtaagaaaataaaattaatagtttaaattggtgta 35917615  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 35917593 - 35917531
Alignment:
Q  342 ttttgcagtcgtttcatagcatagtattgaatgtataattaatatgatatttatttacgaaatt 405  Q
    |||||||||| ||| |||||| || |||||||||||||| |||||||||||||| |||||||||    
T  35917593 ttttgcagtcattt-atagcaaagcattgaatgtataatcaatatgatatttatatacgaaatt 35917531  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 9795712 - 9795768
Alignment:
Q  349 gtcgtttcatagcatagtattgaatgtataattaatatgatatttatttacgaaatt 405  Q
    ||||||||||| |||||||||||||||||||| |||||  ||||||  |||||||||    
T  9795712 gtcgtttcataacatagtattgaatgtataatcaatatactatttacatacgaaatt 9795768  T

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Target: scaffold0161 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 8212 - 8174
Alignment:
Q  204 gcggttccttttctgatagcaatttcttttcattattaa 242  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  8212 gcggttcctttttggatagcaatttcttttcattattaa 8174  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 60345 - 60383
Alignment:
Q  6 cctaatcccgccctttttggtgggtctgaataaatttta 44  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  60345 cctaatcccgccttttttggtgggtctgaataattttta 60383  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 443
Target Start/End: Complemental strand, 30694375 - 30694341
Alignment:
Q  409 caaaacccgtgcatcgcacgggttagagtttagtt 443  Q
    ||||||||||||||||||||||||||||| |||||    
T  30694375 caaaacccgtgcatcgcacgggttagagtctagtt 30694341  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 15108149 - 15108112
Alignment:
Q  7 ctaatcccgccctttttggtgggtctgaataaatttta 44  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  15108149 ctaatcccgccttttttggtgggtctgaataattttta 15108112  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 42694537 - 42694477
Alignment:
Q  252 aattcaggaacacaa-ctagtaatattatttggtaagaaaataaagttaatagcttaaatt 311  Q
    ||||||| ||||||| ||| | |||||||||| ||| |||||||||| |||||||||||||    
T  42694537 aattcagaaacacaatctaatgatattatttgataaaaaaataaagtcaatagcttaaatt 42694477  T

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