View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5352_low_4 (Length: 374)
Name: NF5352_low_4
Description: NF5352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5352_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 33970608 - 33970981
Alignment:
| Q |
1 |
tcatcaaataataaaaaccgtaccgtagcataatcagaagcgatttgatgagctgaaatcaatccaccaagtaccctaatagtcgtctcaaaaacagaaa |
100 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33970608 |
tcataaaataagaaaaaccgtaccgtagcataatcagaagcgatttgatgagctgaaatcaatccaccaagtaccctaatagtcgtctcaaaaacagaaa |
33970707 |
T |
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| Q |
101 |
ccgttttattctgcaaaccaaccaaacatagaataaaccaaccatatccaaataaataaataaaactttttaacattttactgaaatcaataataattag |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33970708 |
ccgttttattctgcaaaccagccaaacatagaataaaccaaccatatccaaataaataaataaaactttttaacattttacttaaatcaataataattag |
33970807 |
T |
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| Q |
201 |
aatgaattagttgactctactcactatcatatcaaagcgaagatttttaccaatccattcaacagaagctgcaaaacgttcacgatcaccaagtaacgcc |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33970808 |
aatgaattagttgattctactcactatcatatcaaagcgaagatttttaccaatccattcaacagaagctgcaaaccgttcacgatcaccaagtaacgcc |
33970907 |
T |
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| Q |
301 |
aaagtatccaacgaatcaatctgcatttcatttcaatttcaatttcagtatacaccgataataatttgagaaaa |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33970908 |
aaagtatccaacgaatcaatctgcatttcatttcaatttcaatttcagtatacaccaataataatttgagaaaa |
33970981 |
T |
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