View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5352_low_5 (Length: 372)
Name: NF5352_low_5
Description: NF5352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5352_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 178 - 354
Target Start/End: Original strand, 34353937 - 34354112
Alignment:
| Q |
178 |
gtgaatcgcc-attaacttgatgttgtaaggttttagatagagatatgatggtggcgtctctctcatatttgtatggttgttcttgatccaatgtggatg |
276 |
Q |
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| T |
34353937 |
gtgaatcgcccattaacttgatgttgtaaggttttagatagagatatgatggtggtgtctctctcat--ttgtatggttgttcttgatccaatgtggatg |
34354034 |
T |
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| Q |
277 |
atctctccgactcttcttatgatccaacaatggcatagagtcgatggtttgattgattcttgtattacaagtctttct |
354 |
Q |
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| T |
34354035 |
atctctccgactcttcttatgatccaacaatggcatagagtcgatggtttgattgattcttgtattacaagtctttct |
34354112 |
T |
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Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 34353617 - 34353777
Alignment:
| Q |
1 |
caagttaagacatatgagagatataaagaactaagatgtaaagtctagatataatttaatgccttgagtggtttgagtgcnnnnnnntccaggtctcaat |
100 |
Q |
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| T |
34353617 |
caagttaagacttatgagagatataaagaactaagatgtaaattctagatataatttaatgccttgagtg---------caaaaaaatccaggtctcaat |
34353707 |
T |
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| Q |
101 |
tctgaaagttgaaaccggatatgaaactaaaaatgttggtattagtatgagtaaaaggtttacattgaat |
170 |
Q |
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| T |
34353708 |
tctgaaagttgaaaccggatatgaaactaaaaatgttggtattagtatgagtaaaaggtttccattgaat |
34353777 |
T |
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