View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5352_low_6 (Length: 366)
Name: NF5352_low_6
Description: NF5352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5352_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 17583543 - 17583898
Alignment:
| Q |
1 |
atggtcaaacttcatgttcgtggcatcttttcttctccttttatgtaaaatcgggtgacacaatttttcttgaaatcttaaacgatatgggctactaatc |
100 |
Q |
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| T |
17583543 |
atggtcaaacttcatgttagtggcatcttttcttctccttttatgtaaaatcggttgacacaatttttcttgaaatcttaaacgatatgggctactaatc |
17583642 |
T |
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| Q |
101 |
gttcaatattccctccacaagcaagcccattaacccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17583643 |
gttcaatattccctccacaagcaagcccattaacccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaatt |
17583742 |
T |
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| Q |
201 |
ctcaagagttttgaaacttactgtctcttctcttcgctcactccaatcctcagcagtgtatgcatgcatgtat------tcgtatctaccttctccccat |
294 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||||||| |
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| T |
17583743 |
ctc-agagttttgaaacttactg-----tctcttcgctcactccaatcctcagcagcgtatgcatgcatgtatgtattcacttctctaccttctccccat |
17583836 |
T |
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| Q |
295 |
aatgacatgattttctcatgtatcaatctttgtttaattttcctgttttatgtttctttctt |
356 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17583837 |
aataacatgattttctcatgtatcaatctttgtttaattttcctgttttatgtttctttctt |
17583898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 14743540 - 14743184
Alignment:
| Q |
1 |
atggtcaaacttcatgttcgtggcatcttttcttctccttttatgtaaaatcgggtgacacaatttttcttgaaatcttaaacgatatgggctactaatc |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14743540 |
atggtcaaacttcatgttagtggcatcttttcttctccttttatgtaaaatcgggggacacaatttttcttgaaatcttaaacgatatgggctactaatc |
14743441 |
T |
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| Q |
101 |
gttcaatattccctccacaagcaagcccattaacccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14743440 |
gttcaatattccctccacaagcaagcccattaacccaacaaatcaccaaattaacggtatttattgcaatatcgtcattttcactgttcattttccaatt |
14743341 |
T |
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| Q |
201 |
ctcaagagttttgaaacttactgtctcttctcttcgctcactccaatcctcagcagtgtatgcatgcatgtat------tcgtatctaccttctccccat |
294 |
Q |
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|||||||||||||||||||||||||||||| || | |||||||||||||||| ||||||||||||||| | | |||||||||||||||| |
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| T |
14743340 |
ctcaagagttttgaaacttactgtctcttcgctac-----ctccaatcctcagcagcatatgcatgcatgtatgtattcacttctctaccttctccccat |
14743246 |
T |
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| Q |
295 |
aatgacatgattttctcatgtatcaatctttgtttaattttcctgttttatgtttctttctt |
356 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14743245 |
aagagcatgattttctcatgtatcaatctttgttgaattttcctgttttatgtttctttctt |
14743184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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