View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5352_low_9 (Length: 248)
Name: NF5352_low_9
Description: NF5352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5352_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 29128063 - 29127828
Alignment:
| Q |
13 |
tcatcataacaactcctctcacctaaaattccaacataataattaagccaccataaaaacacaacttctcagcaaaatttcagtttataaactcactcac |
112 |
Q |
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| T |
29128063 |
tcatcataacaactcctctcacctaaaatttcaacataataattaagccaccataaaaacacaacttctcagcaaaatttcagtttataaactcactcac |
29127964 |
T |
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| Q |
113 |
caattggattaacattcccccagtaagtctctttctgaggatgctccaaaggatcaccatatacctcactagtactagttaaaagaaacctcgccccaat |
212 |
Q |
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| T |
29127963 |
caattggattaacattcccccagtaagtctctttctgaggatgctccaaaggatcaccatatacctcactagtactagttaaaagaaacctcgccccaat |
29127864 |
T |
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| Q |
213 |
tctctttgctagccccaacatattaagtgtacccat |
248 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29127863 |
tctctttgctagccccaacatattaagtgtacccat |
29127828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 39567034 - 39567120
Alignment:
| Q |
107 |
actcaccaattggattaacattcccccagtaagtctctttctgaggatgctccaaaggatcaccatatacctcactagtactagtta |
193 |
Q |
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||||||||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||| |||| |
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| T |
39567034 |
actcaccaattggattaacgtttccccagtaagtctccttctgaggatgctccagaggatcaccataaacctcacttgtacttgtta |
39567120 |
T |
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