View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5353-Insertion-1 (Length: 880)

Name: NF5353-Insertion-1
Description: NF5353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5353-Insertion-1
NF5353-Insertion-1
[»] chr3 (1 HSPs)
chr3 (8-868)||(47710142-47710999)
[»] chr5 (2 HSPs)
chr5 (395-544)||(16559621-16559771)
chr5 (499-544)||(19793477-19793522)
[»] chr6 (1 HSPs)
chr6 (212-307)||(15833561-15833653)


Alignment Details
Target: chr3 (Bit Score: 813; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 813; E-Value: 0
Query Start/End: Original strand, 8 - 868
Target Start/End: Original strand, 47710142 - 47710999
Alignment:
Q  8 atataaaatagcacctgtttccaaaactaaatatctttctgtataaaagaataagaacgcagctatgttagctttaatatatattgtgtacaaacttcat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  47710142 atataaaatagcacctgtttccaaaactaaatatctttctgtataaaagaataagaacgcagctatgctagctctaatatatattgtgtacaaacttcat 47710241  T
Q  108 atacgaatagtggaattgcataataagttatttagagttcatgtagaagagggttaatgaaagtgttaaaatttaaaaacattatactagagtaaaatat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  47710242 atacgaatagtggaattgcataataagttatttagagttcatgtagaagagggttaatgaaagtgttaaaatttaaaa-cattatact-gagtaaaatat 47710339  T
Q  208 tggtttagttatcagcatcactcaaaatcatttgcaagtgacataccttgattatcagggagcaccaactcatagcctggtttcacaatatcagtcactt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47710340 tggtttagttatcagcatcactcaaaatcatttgcaagtgacataccttgattatcagggagcaccaactcatagcctggtttcacaatatcagtcactt 47710439  T
Q  308 ggattgtgataatgatatctcttctagaattaaaatatcttcagccatcattaccaaaccacttccatccctcttgaacaagcaaggggtctctcattca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47710440 ggattgtgataatgatatctcttctagaattaaaatatcttcagccatcattaccaaaccacttccatccctcttgaacaagcaaggggtctctcattca 47710539  T
Q  408 ccacaagaactatatcagatagagcagctcctggatgttggtttccattcccaggaagagtaatttttgtgcctttctctaacaagttttaatgtctata 507  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47710540 ccacaaaaactatatcagatagagcagctcctggatgttggtttccattcccaggaagagtaatttttgtgcctttctctaacaagttttaatgtctata 47710639  T
Q  508 ttcaagatttcttctatacacttcaacttcctgtcaagtcaaaaccaacttagaaaatattgtagtccgaattttgtgttgatataatttccattcgatt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47710640 ttcaagatttcttctatacacttcaacttcctgtcaagtcaaaaccaacttagaaaatattgtagtccgaattttgtgttgatataatttccattcgatt 47710739  T
Q  608 ttgctgagttcaactgtaaataagcttgataatcaaacaaagcaatcaagcatatgtcacacaatatttctaaattgcggttcgagactgaaattgcagc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47710740 ttgctgagttcaactgtaaataagcttgataatcaaacaaagcaatcaagcatatgtcacacaatatttctaaattgcggttcgagactgaaactgcagc 47710839  T
Q  708 cataatataaaaggttttagaggtttccacagcagcattgtaaccgcaaccgtgcccgtatcggttgctgtattttgctgcaatatcaaattttgcagca 807  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47710840 cataatataaaaggttttagaggtttccgcagcagcattgtaaccgcaaccgtgtccgtatcggttgctgtattttgctgcaatatcaaattttgcagca 47710939  T
Q  808 taaccacaaccgcaattttagcaccaaaaagtagtatcttactgtcattaacatccagagg 868  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47710940 taaccacaaccgcaa-tttagcaccaaaaagtagtatcttactgtcattaacatccagagg 47710999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 395 - 544
Target Start/End: Complemental strand, 16559771 - 16559621
Alignment:
Q  395 ggtctctcattcaccacaagaactatatcagatagagcagctcctggatgttggtttccattcccaggaagagtaatttttgtgcctttc-tctaacaag 493  Q
    ||||||||||||||||||| || || ||||||| | |||| ||| || |||||| |||| || ||||||| ||| ||||||||||| ||| || ||| ||    
T  16559771 ggtctctcattcaccacaaaaattacatcagatggtgcagatccgggttgttggcttccttttccaggaaaagtgatttttgtgcccttcttccaaccag 16559672  T
Q  494 ttttaatgtctatattcaagatttcttctatacacttcaacttcctgtcaa 544  Q
     |||||| | ||| |||||||||||||||  || |||||||||||||||||    
T  16559671 gtttaatatgtatcttcaagatttcttcttcactcttcaacttcctgtcaa 16559621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 544
Target Start/End: Original strand, 19793477 - 19793522
Alignment:
Q  499 atgtctatattcaagatttcttctatacacttcaacttcctgtcaa 544  Q
    |||||||| |||||||||||||||||| | ||| ||||||||||||    
T  19793477 atgtctattttcaagatttcttctatatatttccacttcctgtcaa 19793522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 15833561 - 15833653
Alignment:
Q  212 ttagttatcagcatcactcaaaatcatttgcaagtgacataccttgattatcagggagcaccaactcatagcctggtttcacaatatcagtcactt 307  Q
    ||||||||||||| |||||||| || |||||||||| |||||||| ||||   | || |||||||||||||||||||||||||||||||| |||||    
T  15833561 ttagttatcagcaccactcaaagtcctttgcaagtggcataccttcatta---gtgaccaccaactcatagcctggtttcacaatatcagccactt 15833653  T

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