View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5353_low_1 (Length: 554)
Name: NF5353_low_1
Description: NF5353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5353_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 153 - 536
Target Start/End: Complemental strand, 7525500 - 7525117
Alignment:
| Q |
153 |
acaacacgaacaagaacaacaatctaataactctcctcaaacctacatcatccacgtggcaaaacaaccaaaaaattcaattttctcaaccaatcnnnnn |
252 |
Q |
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| T |
7525500 |
acaacacgaacaagaacaacaatctaataactctcctcaaacctacatcatccacgtggcaaaacaaccaaaaaattcaattttctcaaccaatcaaaaa |
7525401 |
T |
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| Q |
253 |
nnccatttctcttccattctcaactccctcccaccatcccctaacccagcaaccatcctatacacatgcacatccgccattcacggcttctcagcccact |
352 |
Q |
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| T |
7525400 |
acccatttctcttccattctcaactccctcccaccatcccctaacccagcaaccatcctatacacatacacatccgccattcacggcttctcagcccact |
7525301 |
T |
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| Q |
353 |
taaccccatcccaagctgcccaccttcaatcccatccggacatcctctcgatccaatctgatcaaattcgctatcttcatactactcacacccccgtttt |
452 |
Q |
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| T |
7525300 |
tagccccatcccaagctgcccaccttcaatcccatccggacatcctctcgattcaaactgaccaaattcgctatcttcatactactcacacccccgtttt |
7525201 |
T |
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| Q |
453 |
cctcggcctcaccgaatcctccggcctatggcctaactctcatttcgcttctgaagtcatcgtcggtgtccttgacaccggtat |
536 |
Q |
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| T |
7525200 |
cctcggcctcaccgaatcctccggcctatggcctaactctcatttcgcttctgaagtcatcgtcggtgtccttgacaccggtat |
7525117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 7525648 - 7525565
Alignment:
| Q |
3 |
acttgtcacaaagtgaataataataattcacaaatcacacaataaaaaccctattccaattcacaaggaaaac-caaacacaaatgg |
88 |
Q |
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| T |
7525648 |
acttgtcacaaagtgaataataat---tcacaaatcacacaataaaaaccctattccaattcataaggaaaactcacacacaaatgg |
7525565 |
T |
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