View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5354-Insertion-1 (Length: 904)

Name: NF5354-Insertion-1
Description: NF5354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5354-Insertion-1
NF5354-Insertion-1
[»] chr7 (7 HSPs)
chr7 (8-904)||(32442421-32443317)
chr7 (60-93)||(529403-529436)
chr7 (134-174)||(5939027-5939068)
chr7 (55-88)||(15740560-15740593)
chr7 (60-93)||(28165119-28165152)
chr7 (55-92)||(39370821-39370858)
chr7 (16-93)||(46082064-46082141)
[»] chr8 (16 HSPs)
chr8 (133-206)||(26820113-26820184)
chr8 (55-93)||(9700029-9700067)
chr8 (55-95)||(39866738-39866778)
chr8 (55-90)||(3600742-3600777)
chr8 (55-90)||(14339609-14339644)
chr8 (55-94)||(31875599-31875638)
chr8 (55-93)||(5088880-5088918)
chr8 (11-85)||(11569417-11569491)
chr8 (133-206)||(12224984-12225056)
chr8 (55-93)||(12361220-12361258)
chr8 (55-93)||(20672778-20672816)
chr8 (58-96)||(43168517-43168555)
chr8 (13-82)||(14949905-14949974)
chr8 (60-93)||(31862521-31862554)
chr8 (60-93)||(35643997-35644030)
chr8 (133-173)||(38561670-38561711)
[»] chr5 (8 HSPs)
chr5 (60-96)||(35531164-35531200)
chr5 (56-93)||(31694546-31694583)
chr5 (55-95)||(13604853-13604893)
chr5 (55-95)||(17258887-17258927)
chr5 (55-95)||(21768201-21768241)
chr5 (55-93)||(14331395-14331433)
chr5 (62-95)||(8089962-8089995)
chr5 (56-93)||(31688067-31688104)
[»] chr2 (7 HSPs)
chr2 (55-173)||(1939336-1939458)
chr2 (55-93)||(34652040-34652078)
chr2 (55-94)||(31096328-31096367)
chr2 (55-89)||(10285892-10285926)
chr2 (131-164)||(3458611-3458644)
chr2 (30-95)||(11063219-11063284)
chr2 (56-89)||(40279439-40279472)
[»] chr1 (12 HSPs)
chr1 (55-91)||(11695891-11695927)
chr1 (55-93)||(39270429-39270467)
chr1 (55-92)||(36151509-36151546)
chr1 (55-95)||(37593688-37593728)
chr1 (55-94)||(20713683-20713722)
chr1 (61-92)||(30581830-30581861)
chr1 (58-93)||(31294528-31294563)
chr1 (55-93)||(6292521-6292559)
chr1 (55-93)||(11639420-11639458)
chr1 (55-93)||(21002188-21002226)
chr1 (55-93)||(31517744-31517782)
chr1 (133-166)||(4363717-4363750)
[»] chr6 (13 HSPs)
chr6 (30-96)||(9027603-9027669)
chr6 (55-93)||(9667989-9668027)
chr6 (56-93)||(7148694-7148731)
chr6 (60-93)||(35070476-35070509)
chr6 (10-93)||(2460110-2460193)
chr6 (10-93)||(32386522-32386605)
chr6 (55-93)||(4246438-4246476)
chr6 (55-93)||(6647415-6647453)
chr6 (11-93)||(8420157-8420239)
chr6 (55-125)||(28641753-28641823)
chr6 (55-88)||(1575783-1575816)
chr6 (62-95)||(13908489-13908522)
chr6 (55-88)||(31624123-31624156)
[»] chr3 (14 HSPs)
chr3 (55-93)||(3044263-3044301)
chr3 (55-93)||(25925770-25925808)
chr3 (134-206)||(20192692-20192763)
chr3 (56-93)||(25170835-25170872)
chr3 (58-94)||(32064466-32064502)
chr3 (138-174)||(37788804-37788840)
chr3 (139-189)||(10101567-10101618)
chr3 (139-189)||(10212492-10212543)
chr3 (55-89)||(5391911-5391945)
chr3 (55-89)||(13804809-13804843)
chr3 (55-93)||(20192610-20192648)
chr3 (15-89)||(37273166-37273240)
chr3 (134-174)||(24605102-24605143)
chr3 (133-174)||(33434092-33434133)
[»] chr4 (9 HSPs)
chr4 (58-93)||(25548135-25548170)
chr4 (10-93)||(27123311-27123394)
chr4 (62-125)||(28300310-28300373)
chr4 (133-168)||(30743315-30743350)
chr4 (55-93)||(2996601-2996639)
chr4 (55-93)||(11264329-11264367)
chr4 (55-93)||(53315354-53315392)
chr4 (18-95)||(43932461-43932538)
chr4 (56-93)||(51117004-51117041)


Alignment Details
Target: chr7 (Bit Score: 841; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 8 - 904
Target Start/End: Complemental strand, 32443317 - 32442421
Alignment:
Q  8 tatacttgtgagactgtttattagagcttatggaaggatctcattagatgtccataagctgttttcaacttattttcataagctcttctctatggcaaat 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32443317 tatacttgtgagactgtttattagagcttatggaaggagctcattagatgtccataagctgttttcaacttattttcataagcgcttctctatggcaaat 32443218  T
Q  108 gaaaacagtttatagcttgcaataaagtttgactttatttaatcttttgttataaaataacttataccgtaagcacttaattgaagttgtttatccaaat 207  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32443217 gaaaacagtttatagcttgcaataaagtttgactttaattaatcttttgttataaaataacttatactgtaagcacttaattgaagttgtttatccaaat 32443118  T
Q  208 aaggcctatatgtcattatgaggaattattgaaaaatttatgttttatgctgctgactgtcaacttatactgtaagcacttttttatgcagccacagaac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32443117 aaggcctatatgtcattatgaggaattattgaaaaatttatgttttatgctgctgactgtcaacttatactgtaagcacttttttatgcagccacagaac 32443018  T
Q  308 ttgttactaggtctatcaaggtgatgatggaatcaggctgcgatgaggtatgtataattgtatgtaactatgagatagattggatgaacttttaaataag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32443017 ttgttactaggtctatcaaggtgatgatggaatcaggctgcgatgaggtatgtataattgtatgttactatgagatagattggatgaacttttaaataag 32442918  T
Q  408 cacctattataggaaaataaaattgaaataattttatctcctaaacatattttgcttcttgtatctttgtacttaaaagatctttttgtttgtcagaaat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32442917 cacctattataggaaaataaaattgaaataattttatctcctaaacatattttgcttcttgtatctttgtacttaaaagatctttttgtttgtcagaaat 32442818  T
Q  508 caattgcctaccaattgaaaagtttctaccagtcagaagttgaactaaacctggcctatatctagttgtcttccaatgtcatgtagtttaggcatgtaga 607  Q
    ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32442817 caattgcctgctaattgaaaagtttctaccagtcagaagttgagctaaacctggcctatatctagttgttttccaatgtcatgtagtttaggcatgtaga 32442718  T
Q  608 gaaggcttttagtattcgtgttggttggcaaccatttcccttatttaagtgctagcttccatgtcagtttgtgcgaataacaacaacagtaagagtattt 707  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32442717 gaaggcttttagttttcgtgttggttggcaaccattttccttatttaagtgctagcttccatgtcagtttgtgcgaataacaacaacagtgagagtattt 32442618  T
Q  708 ttccaccaggtggggtcagttacgagatcaaacaacgctataataacatcttatgtcctatcttgaaccatgtctaatgatagactatttaaagttaaat 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  32442617 ttccaccaggtggggtcagttacgagatcaaacaacgctataataacatcttatgtcctatcttgaaccgcgtctaatgatagactatttaaagttaaat 32442518  T
Q  808 ccctcttaaacctgtagcgttccttaacctctctctacctcttaactatttgattatacttattccttcatcgtatctatctttgtcgttggtgttc 904  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32442517 ccctcttaaacctgtagcgttccttaacctctctctacctcttaactatttgattatacttattccttcatcgtatctatctttgtcgttggtgttc 32442421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 529436 - 529403
Alignment:
Q  60 cataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  529436 cataagctgttttcaacatattttcataagctct 529403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 5939068 - 5939027
Alignment:
Q  134 gtttgactttatttaatcttttgttat-aaaataacttatac 174  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  5939068 gtttgactttatttaattttttgttataaaaataacttatac 5939027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 15740560 - 15740593
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataa 88  Q
    ||||||||||| ||||||||||||||||||||||    
T  15740560 atgtccataaggtgttttcaacttattttcataa 15740593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 28165152 - 28165119
Alignment:
Q  60 cataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||||||||||||| ||||||||||    
T  28165152 cataagctgttttcaacttatttccataagctct 28165119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 39370858 - 39370821
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctc 92  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  39370858 atgtccataaactgttttcaacttattttcattagctc 39370821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 46082141 - 46082064
Alignment:
Q  16 tgagactgtttattagagcttatggaaggatctcattagatgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||| || |||||||||| ||  | || || | ||| ||||||| |||||||| ||||||||||||||||||    
T  46082141 tgagactgttaatgagagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctct 46082064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 26820184 - 26820113
Alignment:
Q  133 agtttgactttatttaatcttttgttata-aaataacttataccgtaagcacttaattgaagttgtttatccaaa 206  Q
    ||||||||||||||| ||||||||||||| |||||||||||||  ||||| |||||||| |||||||||||||||    
T  26820184 agtttgactttattttatcttttgttatagaaataacttatac--taagcgcttaattg-agttgtttatccaaa 26820113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 9700067 - 9700029
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  9700067 atgtccataagctgttttcaccttattttcataagctct 9700029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 39866738 - 39866778
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctcttc 95  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  39866738 atgtccataagctgttttcagtttattttcataagctcttc 39866778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 3600742 - 3600777
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagc 90  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3600742 atgtccataagttgttttcaacttattttcataagc 3600777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 14339609 - 14339644
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagc 90  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14339609 atgtccataagttgttttcaacttattttcataagc 14339644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 31875599 - 31875638
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctctt 94  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  31875599 atgtccataagccattttcaacttattttcataagctctt 31875638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 5088918 - 5088880
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  5088918 atgtccataagctgttttcaacttatttcaataagctct 5088880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 11569417 - 11569491
Alignment:
Q  11 acttgtgagactgtttattagagcttatggaaggatctcattagatgtccataagctgttttcaacttattttca 85  Q
    |||||||||||||||||  |||||||||||||  | || || | |||| |||||| |||||||| ||||||||||    
T  11569417 acttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttca 11569491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 12224984 - 12225056
Alignment:
Q  133 agtttgactttatttaatcttttgttata-aaataacttataccgtaagcacttaattgaagttgtttatccaaa 206  Q
    ||||||||||||||| |||||||||  || |||||||||||| | ||||| ||||||| ||||||||||||||||    
T  12224984 agtttgactttattttatcttttgtcttagaaataacttata-cataagctcttaatt-aagttgtttatccaaa 12225056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 12361258 - 12361220
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  12361258 atgtccataagctgttttcaacttatttccattagctct 12361220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 20672816 - 20672778
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  20672816 atgttcataagctgttttcagcttattttcataagctct 20672778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 43168517 - 43168555
Alignment:
Q  58 tccataagctgttttcaacttattttcataagctcttct 96  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  43168517 tccataagctgtttttagcttattttcataagctcttct 43168555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 14949974 - 14949905
Alignment:
Q  13 ttgtgagactgtttattagagcttatggaaggatctcattagatgtccataagctgttttcaacttattt 82  Q
    |||||||||||||||  |||||||||| ||  | || || | |||||||||||||||||||| |||||||    
T  14949974 ttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttattt 14949905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 31862554 - 31862521
Alignment:
Q  60 cataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||||| ||||||||||||||||||    
T  31862554 cataagctgttttcagcttattttcataagctct 31862521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 35643997 - 35644030
Alignment:
Q  60 cataagctgttttcaacttattttcataagctct 93  Q
    |||||||| |||||||||||||||||||||||||    
T  35643997 cataagcttttttcaacttattttcataagctct 35644030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 38561711 - 38561670
Alignment:
Q  133 agtttgactttatttaatcttttgttata-aaataacttata 173  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  38561711 agtttgactttattttatcttttgttatataaataacttata 38561670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 35531200 - 35531164
Alignment:
Q  60 cataagctgttttcaacttattttcataagctcttct 96  Q
    |||||||||||||||||||||||||||||||||||||    
T  35531200 cataagctgttttcaacttattttcataagctcttct 35531164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 31694583 - 31694546
Alignment:
Q  56 tgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||| |||||||||||||||||||||||||||    
T  31694583 tgtccataagttgttttcaacttattttcataagctct 31694546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 13604853 - 13604893
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctcttc 95  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  13604853 atgtccatacgttgttttcaacttattttcataagctcttc 13604893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 17258887 - 17258927
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctcttc 95  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  17258887 atgttcataagctgttttcagcttattttcataagctcttc 17258927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 21768201 - 21768241
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctcttc 95  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  21768201 atgtccatacgctgttttcaacttattttcgtaagctcttc 21768241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 14331433 - 14331395
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  14331433 atgtccataagctgatttcagcttattttcataagctct 14331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 8089995 - 8089962
Alignment:
Q  62 taagctgttttcaacttattttcataagctcttc 95  Q
    ||||||||||||| ||||||||||||||||||||    
T  8089995 taagctgttttcagcttattttcataagctcttc 8089962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 31688104 - 31688067
Alignment:
Q  56 tgtccataagctgttttcaacttattttcataagctct 93  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  31688104 tgtctataagctattttcaacttattttcataagctct 31688067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 1939336 - 1939458
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctcttctctatggcaaatgaaaacagtttatagct-----tgcaataaagtttgactttatttaa 149  Q
    |||||||||||||||||||||||||||| |||||||||| |  ||| ||  |||||||||| ||||||||     || || | ||||| ||||||||| |    
T  1939336 atgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaacag-ttatagctcaatatg-aaaatagtttcactttatttta 1939433  T
Q  150 tcttttgttata-aaataacttata 173  Q
    |||||||||||| ||||||||||||    
T  1939434 tcttttgttatagaaataacttata 1939458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 34652040 - 34652078
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  34652040 atgtccataagctgttttcaacttatttccataagctct 34652078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 31096367 - 31096328
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctctt 94  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  31096367 atgtccataagctgttttaaacttattttcataagttctt 31096328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 10285926 - 10285892
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataag 89  Q
    |||||||||||||||||||||||||||| ||||||    
T  10285926 atgtccataagctgttttcaacttatttccataag 10285892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 3458644 - 3458611
Alignment:
Q  131 aaagtttgactttatttaatcttttgttataaaa 164  Q
    ||||||||||||||||| ||||||||||||||||    
T  3458644 aaagtttgactttattttatcttttgttataaaa 3458611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 11063284 - 11063219
Alignment:
Q  30 agagcttatggaaggatctcattagatgtccataagctgttttcaacttattttcataagctcttc 95  Q
    |||||||||||||| | || |  ||| |||| ||||||||||||| ||||||| ||||||||||||    
T  11063284 agagcttatggaagcaactaacaagaagtccgtaagctgttttcagcttatttccataagctcttc 11063219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 40279472 - 40279439
Alignment:
Q  56 tgtccataagctgttttcaacttattttcataag 89  Q
    ||||||||| ||||||||||||||||||||||||    
T  40279472 tgtccataaactgttttcaacttattttcataag 40279439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 11695927 - 11695891
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagct 91  Q
    |||||||||||||||||||||||||||||||||||||    
T  11695927 atgtccataagctgttttcaacttattttcataagct 11695891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 39270429 - 39270467
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  39270429 atgtccataagctgttttcaacttattttcatatgctct 39270467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 36151509 - 36151546
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctc 92  Q
    |||||||||| |||||||||||||||||||||||||||    
T  36151509 atgtccataacctgttttcaacttattttcataagctc 36151546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 37593688 - 37593728
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctcttc 95  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  37593688 atgttcataagctgttttcagcttattttcataagctcttc 37593728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 20713722 - 20713683
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctctt 94  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  20713722 atgtccataagctgtttttatcttattttcataagctctt 20713683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 92
Target Start/End: Complemental strand, 30581861 - 30581830
Alignment:
Q  61 ataagctgttttcaacttattttcataagctc 92  Q
    ||||||||||||||||||||||||||||||||    
T  30581861 ataagctgttttcaacttattttcataagctc 30581830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 31294528 - 31294563
Alignment:
Q  58 tccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||| |||||||||||||||||||||||||    
T  31294528 tccataagctcttttcaacttattttcataagctct 31294563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 6292559 - 6292521
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  6292559 atgttcataagctgttttcagcttattttcataagctct 6292521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 11639420 - 11639458
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  11639420 atgtccataagctgtttttagcttattttcataagctct 11639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 21002226 - 21002188
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  21002226 atgtccataagctgttttcaatttattttcataacctct 21002188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 31517744 - 31517782
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  31517744 atgttcataagctgttttcagcttattttcataagctct 31517782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 4363717 - 4363750
Alignment:
Q  133 agtttgactttatttaatcttttgttataaaata 166  Q
    |||||||| |||||||||||||||||||||||||    
T  4363717 agtttgacattatttaatcttttgttataaaata 4363750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 9027669 - 9027603
Alignment:
Q  30 agagcttatggaaggatctcattagatgtccataagctgttttcaacttattttcataagctcttct 96  Q
    |||||||||||||  | || || | ||||||||||| |||||||| |||||||||||||||||||||    
T  9027669 agagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagctcttct 9027603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 9667989 - 9668027
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  9667989 atgtccataagctgttttcaacttatttccataagctct 9668027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 7148731 - 7148694
Alignment:
Q  56 tgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||| |||||||||||||||||||||||||    
T  7148731 tgtccataagctattttcaacttattttcataagctct 7148694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 35070476 - 35070509
Alignment:
Q  60 cataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||||||||||||||||||||||||    
T  35070476 cataagctgttttcaacttattttcataagctct 35070509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 2460110 - 2460193
Alignment:
Q  10 tacttgtgagactgtttattagagcttatggaaggatctcattagatgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||||||||   |||||||||||||  | || || | |||||  |||| |||||||||||||||| ||||||||||    
T  2460110 tacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctct 2460193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 32386522 - 32386605
Alignment:
Q  10 tacttgtgagactgtttattagagcttatggaaggatctcattagatgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||| ||||   |||||||||||||  |||| || | ||||||| ||  |||||||| ||||||||||||||||||    
T  32386522 tacttgtgagaccgtttgaaagagcttatggaaatatcttataacatgtccacaacttgttttcagcttattttcataagctct 32386605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 4246476 - 4246438
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  4246476 atgtccataagctgttttcaacttatttttatatgctct 4246438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 6647453 - 6647415
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  6647453 atgttcataagatgttttcaacttattttcataagctct 6647415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 8420157 - 8420239
Alignment:
Q  11 acttgtgagactgtttattagagcttatggaaggatctcattagatgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||||||  | ||||||||| |||  | || || | ||||||| ||||| |||||||||||||| ||||||||||    
T  8420157 acttgtgagactgttagtgagagcttatagaaatagcttatgacatgtccacaagctattttcaacttatttccataagctct 8420239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 28641753 - 28641823
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctcttctctatggcaaatgaaaacagtttatagctt 125  Q
    |||| ||||||||||||| | |||||||||||||||||| |   || || | |||||||||||||||||||    
T  28641753 atgttcataagctgtttttagcttattttcataagctctgcagaatagctattgaaaacagtttatagctt 28641823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 1575816 - 1575783
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataa 88  Q
    ||||||||||| ||||||||||||||||||||||    
T  1575816 atgtccataaggtgttttcaacttattttcataa 1575783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 13908522 - 13908489
Alignment:
Q  62 taagctgttttcaacttattttcataagctcttc 95  Q
    ||||||||||||| ||||||||||||||||||||    
T  13908522 taagctgttttcagcttattttcataagctcttc 13908489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 31624156 - 31624123
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataa 88  Q
    |||| |||||||||||||||||||||||||||||    
T  31624156 atgttcataagctgttttcaacttattttcataa 31624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 3044263 - 3044301
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  3044263 atgttcataagctgttttcaacttattttcataagctct 3044301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 25925808 - 25925770
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  25925808 atgttcataagctgttttcaacttattttcataagctct 25925770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 20192692 - 20192763
Alignment:
Q  134 gtttgactttatttaatcttttgttata-aaataacttataccgtaagcacttaattgaagttgtttatccaaa 206  Q
    |||||||||||||| ||||||||||||| ||||| |||||| | |||||||||||||| || ||||||||||||    
T  20192692 gtttgactttattttatcttttgttatataaatagcttata-cataagcacttaattg-agctgtttatccaaa 20192763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 25170872 - 25170835
Alignment:
Q  56 tgtccataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  25170872 tgtccataagctgatttcaacttattttcataagctct 25170835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 32064502 - 32064466
Alignment:
Q  58 tccataagctgttttcaacttattttcataagctctt 94  Q
    ||||||| |||||||||||||||||||||||||||||    
T  32064502 tccataaactgttttcaacttattttcataagctctt 32064466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 37788840 - 37788804
Alignment:
Q  138 gactttatttaatcttttgttataaaataacttatac 174  Q
    |||||||||| ||||||||||||||||||||||||||    
T  37788840 gactttattttatcttttgttataaaataacttatac 37788804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 10101567 - 10101618
Alignment:
Q  139 actttatttaatcttttgttata-aaataacttataccgtaagcacttaatt 189  Q
    ||||||||| ||||||||||||| ||||||||||| | ||||||||||||||    
T  10101567 actttattttatcttttgttatagaaataacttattctgtaagcacttaatt 10101618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 10212492 - 10212543
Alignment:
Q  139 actttatttaatcttttgttata-aaataacttataccgtaagcacttaatt 189  Q
    ||||||||| ||||||||||||| ||||||||||| | ||||||||||||||    
T  10212492 actttattttatcttttgttatagaaataacttattctgtaagcacttaatt 10212543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 5391945 - 5391911
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataag 89  Q
    |||| ||||||||||||||||||||||||||||||    
T  5391945 atgttcataagctgttttcaacttattttcataag 5391911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 13804843 - 13804809
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataag 89  Q
    |||||||||||||||||||||||||||||| ||||    
T  13804843 atgtccataagctgttttcaacttattttcttaag 13804809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 20192610 - 20192648
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  20192610 atgtccataagctgttttcaactcatttccataagctct 20192648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 37273240 - 37273166
Alignment:
Q  15 gtgagactgtttattagagcttatggaaggatctcattagatgtccataagctgttttcaacttattttcataag 89  Q
    ||||||||||||   |||||||||||||  | || || | ||||||||||| |||||||||||||||| ||||||    
T  37273240 gtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataag 37273166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 24605102 - 24605143
Alignment:
Q  134 gtttgactttatttaatcttttgttata-aaataacttatac 174  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  24605102 gtttgactttatttcatcttttgttatagaaataacttatac 24605143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 33434092 - 33434133
Alignment:
Q  133 agtttgactttatttaatcttttgttataaaataacttatac 174  Q
    ||||||||||||||| |||||||||||| ||||| |||||||    
T  33434092 agtttgactttattttatcttttgttattaaatatcttatac 33434133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 25548135 - 25548170
Alignment:
Q  58 tccataagctgttttcaacttattttcataagctct 93  Q
    |||||||| |||||||||||||||||||||||||||    
T  25548135 tccataagttgttttcaacttattttcataagctct 25548170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 27123311 - 27123394
Alignment:
Q  10 tacttgtgagactgtttattagagcttatggaaggatctcattagatgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||||||||   |||||||||||||  | || || | |||||  |||| |||||||||||||||| ||||||||||    
T  27123311 tacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctct 27123394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 28300310 - 28300373
Alignment:
Q  62 taagctgttttcaacttattttcataagctcttctctatggcaaatgaaaacagtttatagctt 125  Q
    |||| |||||||||||||||||||||||||||||   || ||  ||||||| ||||||||||||    
T  28300310 taagttgttttcaacttattttcataagctcttcaagatagcctatgaaaatagtttatagctt 28300373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 30743350 - 30743315
Alignment:
Q  133 agtttgactttatttaatcttttgttataaaataac 168  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30743350 agtttgactttattttatcttttgttataaaataac 30743315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 2996639 - 2996601
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  2996639 atgtccataagcttttttcaacttattttcatacgctct 2996601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 11264367 - 11264329
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  11264367 atgtccataaactgttttcaacttatttccataagctct 11264329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 53315392 - 53315354
Alignment:
Q  55 atgtccataagctgttttcaacttattttcataagctct 93  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  53315392 atgtccataagctatttttaacttattttcataagctct 53315354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 43932538 - 43932461
Alignment:
Q  18 agactgtttattagagcttatggaaggatctcattagatgtccataagctgttttcaacttattttcataagctcttc 95  Q
    ||||||||||  |||| ||| ||||| | ||||| | ||||||||||| |||||||| |||||||||| ||| |||||    
T  43932538 agactgtttaggagagtttacggaagcagctcatgacatgtccataagttgttttcatcttattttcacaagttcttc 43932461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 51117004 - 51117041
Alignment:
Q  56 tgtccataagctgttttcaacttattttcataagctct 93  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  51117004 tgtccataagctgttttcaatttatttccataagctct 51117041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University