View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5354-Insertion-2 (Length: 901)
Name: NF5354-Insertion-2
Description: NF5354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5354-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 299 - 615
Target Start/End: Complemental strand, 28441989 - 28441671
Alignment:
| Q |
299 |
ttaatgcacgttgatccacctattgcgcagctaaatctatatattattattggttttggaaaaaatatatgcttgggatttat--gactcatgaagggtg |
396 |
Q |
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| T |
28441989 |
ttaatgcacgttgatccacctattgcgcagctaaatctatatattattattggttttggaaaaaatatatgcttgggatttatatgactcatgaagggtg |
28441890 |
T |
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| Q |
397 |
aatttaaatattagtgcatcacttgtatcttagacaaatgctctcaatgctcggttgttgaagagggtgaggcctatgctattttcctttccctttaaga |
496 |
Q |
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| T |
28441889 |
aatttaaatattagtgcatcacttgtatcttagacaaatgctctcaatgctcggttgttgcagagggtgaggcctatgctattttcctttccctttaaga |
28441790 |
T |
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| Q |
497 |
ctgctgaaaactagggctataaactcatgtctgcttagcaatgtaatagtggatgctaatatctatacaattatgagacgaaggttgttcaataagccct |
596 |
Q |
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| T |
28441789 |
ctgctgaaaactagggctataaactcatgtctgcttagcaatgtaatagtggatgctaatatctatacaattatgagacgaaggttgttcaataagccct |
28441690 |
T |
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| Q |
597 |
tcaaaattgcctacatttt |
615 |
Q |
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| T |
28441689 |
tcaaaattgcctatatttt |
28441671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 703 - 901
Target Start/End: Complemental strand, 28441639 - 28441440
Alignment:
| Q |
703 |
gattggttgagaaatttgaggggcccagttgagcaaccatctaatgagatcgatagacaatcttttgaaaaatgtcgcaaaattatagccgatcatagtc |
802 |
Q |
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| T |
28441639 |
gattggttgagaaatttgaggggcccagttgagcaaccatctaatgagatcgatagacaatcttttgaaaaatgtcgcaaaattatagccgatcatagtc |
28441540 |
T |
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| Q |
803 |
attacaagctagattttgttaggaggcaagttgattgggtttgtcatagcagcttagttagagcatc-atattagtctggaccctatgtgtttgtctatg |
901 |
Q |
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| T |
28441539 |
attacaagctagattttgttaggaggcaagttgattgggtttgtcatggcagcttagttagagcatcaatattagtctggcccctatgtgtttgtctatg |
28441440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 89 - 261
Target Start/End: Complemental strand, 28442157 - 28441985
Alignment:
| Q |
89 |
aaaaactgcaaatcaaactggagcttcatagctaaaaattaaatttctatgtaaactcaagtcaaaggagatttaatttgctatgatagtaataagtata |
188 |
Q |
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| T |
28442157 |
aaaaactgcaaatcaaactggagcttcatagctaaaaattaactttctatgtaaactcaagtcaaaggagatttaatttgctatgataggaataagtata |
28442058 |
T |
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| Q |
189 |
tggatctgctcaggtaaaataacaagaaaaagacaaagattttagtttgatatttcatttattcatatttaat |
261 |
Q |
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| T |
28442057 |
tggatctgctcagctaaaataacaagaaaaagacaaagattttagtttgatacttcatttattcatatttaat |
28441985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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