View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5354_low_3 (Length: 229)

Name: NF5354_low_3
Description: NF5354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5354_low_3
NF5354_low_3
[»] chr8 (4 HSPs)
chr8 (18-229)||(42472680-42472891)
chr8 (66-229)||(42479926-42480089)
chr8 (66-221)||(42467369-42467524)
chr8 (68-152)||(33362311-33362395)
[»] chr2 (2 HSPs)
chr2 (68-152)||(5087402-5087486)
chr2 (68-210)||(43524041-43524183)
[»] scaffold0005 (1 HSPs)
scaffold0005 (68-152)||(41175-41259)
[»] chr7 (2 HSPs)
chr7 (68-152)||(31420673-31420757)
chr7 (68-210)||(41595435-41595577)
[»] chr6 (2 HSPs)
chr6 (68-152)||(95976-96060)
chr6 (68-105)||(9303551-9303588)
[»] chr5 (3 HSPs)
chr5 (68-152)||(22271649-22271733)
chr5 (68-210)||(23122262-23122404)
chr5 (68-210)||(14008286-14008428)
[»] chr4 (1 HSPs)
chr4 (68-152)||(14798469-14798553)
[»] chr3 (4 HSPs)
chr3 (68-152)||(2735304-2735388)
chr3 (68-152)||(40924350-40924434)
chr3 (68-151)||(22510924-22511007)
chr3 (68-190)||(22127782-22127904)
[»] chr1 (2 HSPs)
chr1 (68-152)||(27132123-27132207)
chr1 (68-152)||(25535945-25536029)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 42472891 - 42472680
Alignment:
Q  18 gatattgtgcatgttaaagactttgagccatcagaggaagaaatttacgctatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42472891 gatattgtgcatgttaaagactttgagccatcagaggaagaaatttacgctatactttctcgacacaatcttgatgtttctaatattcgtggtcaagggt 42472792  T
Q  118 atgatggcgctagcgatatgagagaacaatggaatagttcgcagacactaattttgaatgaatgtccttatgcataccacattcattgttttgaacataa 217  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42472791 atgatggcactagcgatatgagagaacaatggaatagtttgcagacactaattttgaatgaatgtccttatgcataccacattcattgttttgaacataa 42472692  T
Q  218 gttgcaacctgc 229  Q
    ||||||||||||    
T  42472691 gttgcaacctgc 42472680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 42480089 - 42479926
Alignment:
Q  66 gctatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttcgcagacac 165  Q
    |||||||||||||  || |||||||||||||||||||||||||||||||||||||||||  |  |||| |||||||||||||||||| |||  ||  |||    
T  42480089 gctatactttctcagcataatcttgatgtttctaacattcgtggtcaagggtatgatggtacctgcgaaatgagagaacaatggaatggtttacatgcac 42479990  T
Q  166 taattttgaatgaatgtccttatgcataccacattcattgttttgaacataagttgcaacctgc 229  Q
    || |||||||||||||||||| |||||| ||||||||||||||||  |||||||||||| ||||    
T  42479989 tatttttgaatgaatgtccttctgcatatcacattcattgttttgctcataagttgcaatctgc 42479926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 42467524 - 42467369
Alignment:
Q  66 gctatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttcgcagacac 165  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||  |  ||||||||||||||||||||||| | |  ||  |||    
T  42467524 gctatactttctcgacataatcttgatgtttctaacattcgtggtcaaggttatgacggtacctgcgatatgagagaacaatggaatggcttacaagcac 42467425  T
Q  166 taattttgaatgaatgtccttatgcataccacattcattgttttgaacataagttg 221  Q
    || |||||||| ||||||||| ||||||| ||||||| ||||||| ||||||||||    
T  42467424 tatttttgaatcaatgtccttctgcatactacattcactgttttgcacataagttg 42467369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 33362311 - 33362395
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaat 152  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||  ||||||||| | ||||||||    
T  33362311 tatactttctcgacataaccttgatgtttcaaacattcgtggtcaagggtatgacggtgctagaaatatgagaggagaatggaat 33362395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 5087402 - 5087486
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaat 152  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||    
T  5087402 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgatggtgctagcaatatgagaggagaatggaat 5087486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 43524041 - 43524183
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttcgcagacacta 167  Q
    ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||| | |||||||  |||  ||  || |     
T  43524041 tatactttctcgacataaccttgatgtttctaaccttcgtggtcaagggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattg 43524140  T
Q  168 attttgaatgaatgtccttatgcataccacattcattgttttg 210  Q
     || |||| || ||||||||||||||| |||| ||||||||||    
T  43524141 tttatgaaggattgtccttatgcatactacatccattgttttg 43524183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 41175 - 41259
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaat 152  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | ||||||||    
T  41175 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaat 41259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 31420673 - 31420757
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaat 152  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | ||||||||    
T  31420673 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaat 31420757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 41595435 - 41595577
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttcgcagacacta 167  Q
    ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||| | |||||||  |||  ||  || |     
T  41595435 tatactttctcgacataaccttgatgtttctaaccttcgtggtcaagggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattg 41595534  T
Q  168 attttgaatgaatgtccttatgcataccacattcattgttttg 210  Q
     || |||| || ||||||||||||||| |||| ||||||||||    
T  41595535 tttatgaaggattgtccttatgcatactacatccattgttttg 41595577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 95976 - 96060
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaat 152  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | ||||||||    
T  95976 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaat 96060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 9303551 - 9303588
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattc 105  Q
    ||||||||||||||| || |||||||||||||||||||    
T  9303551 tatactttctcgacataaccttgatgtttctaacattc 9303588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 22271733 - 22271649
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaat 152  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | ||||||||    
T  22271733 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaat 22271649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 23122404 - 23122262
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttcgcagacacta 167  Q
    ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||| | |||||||  |||  ||  || |     
T  23122404 tatactttctcgacataaccttgatgtttctaaccttcgtggtcaagggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattg 23122305  T
Q  168 attttgaatgaatgtccttatgcataccacattcattgttttg 210  Q
     || |||| || ||||||||||||||| |||| ||||||||||    
T  23122304 tttatgaaggattgtccttatgcatactacatccattgttttg 23122262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 14008286 - 14008428
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttcgcagacacta 167  Q
    ||||||||||||||| || ||||||||||||||| ||||||||||| |||||||||| || ||| ||||||||| | |||||||  |||  ||  || |     
T  14008286 tatactttctcgacataaccttgatgtttctaaccttcgtggtcaatggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattg 14008385  T
Q  168 attttgaatgaatgtccttatgcataccacattcattgttttg 210  Q
     || |||| || ||||||||||||||| |||| ||||||||||    
T  14008386 tttatgaaggattgtccttatgcatactacatccattgttttg 14008428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 14798553 - 14798469
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaat 152  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | ||||||||    
T  14798553 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaat 14798469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 2735304 - 2735388
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaat 152  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | ||||||||    
T  2735304 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaat 2735388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 40924350 - 40924434
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaat 152  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | ||||||||    
T  40924350 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaat 40924434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 22511007 - 22510924
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaa 151  Q
    ||||||||||||||| || ||||||||||||||| ||| ||||||||||||| |||| || ||| ||||||||| | |||||||    
T  22511007 tatactttctcgacataaccttgatgtttctaaccttcatggtcaagggtataatggtgcaagcaatatgagaggagaatggaa 22510924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 190
Target Start/End: Complemental strand, 22127904 - 22127782
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttcgcagacacta 167  Q
    |||||||| |||||| ||  |||| |||||||||||| |||||||||||||||| || |||||| ||||||||| | |||||||| |||  ||  |||||    
T  22127904 tatactttttcgacataactttgacgtttctaacatttgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacta 22127805  T
Q  168 attttgaatgaatgtccttatgc 190  Q
     || |||| || |||||||||||    
T  22127804 tttatgaaagattgtccttatgc 22127782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 27132123 - 27132207
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaat 152  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||| || ||||||||| | ||||||||    
T  27132123 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctggcaatatgagaggagaatggaat 27132207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 25535945 - 25536029
Alignment:
Q  68 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaat 152  Q
    |||||||||| |||| || |||||||||||||||| |||||| ||| ||||||| || | |||  ||||||||| | ||||||||    
T  25535945 tatactttctagacataaccttgatgtttctaacaatcgtggccaatggtatgaaggtgttagtaatatgagaggagaatggaat 25536029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University