View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5354_low_4 (Length: 220)
Name: NF5354_low_4
Description: NF5354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5354_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 32443411 - 32443535
Alignment:
| Q |
96 |
taccaatgcctcttcctctgtagggtttgataacaacaagcatagcaatgtatcctctaaaagtgctacgatgttcccccattttacaaaccaccgtgcc |
195 |
Q |
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| T |
32443411 |
taccaatgcctcttcctctgtagggtttgataacaacaagcatagcaatgtatcctctaaaagtgctacgatgttcccccattttacaaaccaccgtgcc |
32443510 |
T |
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| Q |
196 |
cacacatttgcccttatgaaaagcc |
220 |
Q |
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||||||||| ||||||||||||||| |
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| T |
32443511 |
cacacatttacccttatgaaaagcc |
32443535 |
T |
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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32443316 - 32443354
Alignment:
| Q |
1 |
taagctcaaacaatacaatccaaacatacccattatatc |
39 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
32443316 |
taagctcaaacaatacaatccaaacatacccattatatc |
32443354 |
T |
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