View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355-Insertion-1 (Length: 1076)
Name: NF5355-Insertion-1
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Complemental strand, 42031528 - 42031091
Alignment:
| Q |
8 |
taaatgaacttgtttcacattaattttttcatttccttgtatatcttataaaaatacaactgaccttgttagatatcccataatatttaaaaaatcatct |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42031528 |
taaatgaacttgtttcacattaattttttcatttccttgtatatcttataaaaatacaactgaccttgttagatatcccataatatttaaaaaatcatct |
42031429 |
T |
|
| Q |
108 |
atcttagggccaaagtgaaagatttttatagtttacttacaactgacgtaatggaaataagtgaacacagcttaaagagatgccataaatgattatctta |
207 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42031428 |
atcttagggccaaagtgaaagagttttttagtttacttacaactgacgtaatggaaataagtgaacacaacttaaagagatgccataaatgattatctta |
42031329 |
T |
|
| Q |
208 |
acactaaggcaagtccttatgctatatcaacttaaagagaccatcaaatgacatttataaaatggttataagaatgagagtaagggatagcaaaataaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42031328 |
acactaaggcaagtccttatgctatatcaacttaaagagaccatcaaatgacatttataaaatggttataagaatgagagtaagggatagcaaaataaaa |
42031229 |
T |
|
| Q |
308 |
aggatcataaatagaatcatcagtctgttacctttccagaggcctgttcaaaagctgcaaccatctccaaaactgatgttccctttcctgttcccaagtt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42031228 |
aggatcataaatagaatcatcagtctgttacctttccagaggcctgttcaaaagctgcaaccatctccaaaactgatgttccctttcctgttcccaagtt |
42031129 |
T |
|
| Q |
408 |
ataaacctcacaacctgtatgtagacatgaaattttac |
445 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
42031128 |
ataaacctcacaacctgtatgcagacatgaaattttac |
42031091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 693 - 1075
Target Start/End: Complemental strand, 42030808 - 42030420
Alignment:
| Q |
693 |
atgtaagatcctcaaaagaaatcaaaggtagatcttaacaaatgggaattacgcatgtaagaatggaccaactgtggcatcattattatcaaaataatcc |
792 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42030808 |
atgtaagatcctcaaaagaaatcaaaggtagatcttaacaaatgggaattacgcatgtaagaatggaccaactgtggcatcattattatcaaaataatcc |
42030709 |
T |
|
| Q |
793 |
aaatcgaagggaaatagtggatagtgtgtgagcttagcatgcaactttccaagtcaaaatttcag-taaacaagtcaggaacaaag-aaacatactccag |
890 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |
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| T |
42030708 |
aaatcgaagggaaatagtggatagtgtgtgagcttagcatgcaactttccaagtcaaaatttcagcaaaacaagtcaagaacaaagaaaacatactccag |
42030609 |
T |
|
| Q |
891 |
tttccatcacttgtgctataatctgttcc-aaaactgtcaattgcagagcgtctgccaactgcaacttgctgaacaaaaggcatggaagtgttgggaatt |
989 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42030608 |
-ttccatcacttgtgctataatctgttccaaaaactgtcaa-tgcagagcgtctgccaactgcaacttgctgaacaaaaggcatgaggttgttgggaatt |
42030511 |
T |
|
| Q |
990 |
-cgcga-gatcctcacc-atatgaccactaagatgtgcaccaaccggg-tggagtatctc-acagtggttatttcccat-ctggatcagaac |
1075 |
Q |
| |
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||||| |||||||||| ||||||||||| ||||||||||||| ||| || |||||||| ||||| ||||||| |||| |||||||||||| |
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| T |
42030510 |
ccgcgaggatcctcaccaatatgaccactgggatgtgcaccaacggggttgaagtatctcaacagt-gttattttccatcctggatcagaac |
42030420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 498 - 800
Target Start/End: Original strand, 41807607 - 41807898
Alignment:
| Q |
498 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41807607 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
41807706 |
T |
|
| Q |
598 |
aggatcatctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagac-aagatttatcatgt |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
41807707 |
aggatcatctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagacaaagatttatcatgt |
41807806 |
T |
|
| Q |
697 |
aagatcctcaaaagaaatcaaaggtagatcttaacaaatgggaattacgcatgtaagaatggaccaactgtggcatcattattatcaaaataatccaaat |
796 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||| |
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| T |
41807807 |
aagatcctcaaaagaaatcaaaggtagatcttaacaaatg------------gtaagaatggaccaactatgacatcattattatcaaaataatgcaaat |
41807894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 498 - 710
Target Start/End: Complemental strand, 42031038 - 42030825
Alignment:
| Q |
498 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42031038 |
tatcattgtatatgggaatctaacatcagttcgcaaccattgtttttggctgaataaattattagaagaatttgatcaaatttcgaatagtacctgtctt |
42030939 |
T |
|
| Q |
598 |
aggatcatctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagac-aagatttatcatgt |
696 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42030938 |
aggatcatctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaaaaagacaaagatttatcatgt |
42030839 |
T |
|
| Q |
697 |
aagatcctcaaaag |
710 |
Q |
| |
|
|||||||||||||| |
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|
| T |
42030838 |
aagatcctcaaaag |
42030825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 277 - 445
Target Start/End: Original strand, 41807386 - 41807554
Alignment:
| Q |
277 |
aagaatgagagtaagggatagcaaaataaaaaggatcataaatagaatcatcagtctgttacctttccagaggcctgttcaaaagctgcaaccatctcca |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41807386 |
aagaatgagagtaagggatagcaaaataaaaaggatcataaatagaatcatcagtctgttacctttccagaggcctgttcaaaagctgcaaccatctcca |
41807485 |
T |
|
| Q |
377 |
aaactgatgttccctttcctgttcccaagttataaacctcacaacctgtatgtagacatgaaattttac |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41807486 |
aaactgatgttccctttcctgttcccaagttataaacctcacaacctgtatgcagacatgaaattttac |
41807554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 41807173 - 41807355
Alignment:
| Q |
35 |
ttcatttccttgtatatcttataaaaatacaactgaccttgttagatatcccataatattta----aaaaatcatctatctta--gggccaaagtgaaag |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| | ||||| ||| ||||||| || |||||||||||| |
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|
| T |
41807173 |
ttcatttccttgtatatcttataaaaatacagctgactttgtttgatatcccataatattaaaaagaaaaaccatttatcttaagggcccaaagtgaaag |
41807272 |
T |
|
| Q |
129 |
atttttatagtttacttacaactgacgtaatggaaataa-gtgaacacagcttaaagagatgccataaatgattatcttaaca |
210 |
Q |
| |
|
|| |||| || ||| ||| || |||||||||||||||| |||||||| ||||||||||| ||||| | ||||||| |||| |
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|
| T |
41807273 |
atatttacagcttaattagaatagacgtaatggaaataatttgaacacaacttaaagagatagcataatttattatctaaaca |
41807355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 2126587 - 2126685
Alignment:
| Q |
329 |
agtctgttacctttccagaggcctgttcaaaagctgcaaccatctccaaaactgatgttccctttcctgttcccaagttataaacctcacaacctgtat |
427 |
Q |
| |
|
||||| ||||||| ||||| || |||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2126587 |
agtctattaccttcccagatgcatgttcaaaagctctaacaatctccgaaactgatgttccctttcctgttcccaagttataaacctcacaacctgtat |
2126685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 335 - 426
Target Start/End: Original strand, 2131182 - 2131273
Alignment:
| Q |
335 |
ttacctttccagaggcctgttcaaaagctgcaaccatctccaaaactgatgttccctttcctgttcccaagttataaacctcacaacctgta |
426 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
2131182 |
ttacctttccagatgccttctcaaaagctctaaccatctccaaaactgatgttccctttcctgtccccaagttataaacgtcacaacctgta |
2131273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 605 - 676
Target Start/End: Original strand, 2131398 - 2131469
Alignment:
| Q |
605 |
tctagcttacacaatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaa |
676 |
Q |
| |
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||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
2131398 |
tctagtttacgcaatgcagcaatatggccatcagctaaatcaacaacatgaatgtaatcccgaacctgagaa |
2131469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 616 - 676
Target Start/End: Original strand, 2126846 - 2126906
Alignment:
| Q |
616 |
caatgcagcaatgtgcccatcagctaaatcaacaacatgaatgtaatcacggacctgagaa |
676 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||| || |||| |||| |
|
|
| T |
2126846 |
caatgcagcaatgtgcccatctgctaaatcaacaacatgaatgaaatcccgaacctaagaa |
2126906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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