View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5355-Insertion-12 (Length: 456)

Name: NF5355-Insertion-12
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5355-Insertion-12
NF5355-Insertion-12
[»] scaffold0024 (3 HSPs)
scaffold0024 (139-456)||(76926-77226)
scaffold0024 (7-85)||(76794-76872)
scaffold0024 (21-78)||(68743-68800)


Alignment Details
Target: scaffold0024 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 139 - 456
Target Start/End: Original strand, 76926 - 77226
Alignment:
Q  139 taatcgtcaattttgtccctaaacttctctagcaatcgaacaaattgatactaaatcagcaaacaaattaaaaatgcaacatgatcttgaaggtgaaagt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||                 ||||||||||||||||||||||||||||    
T  76926 taatcgtcaattttgtccctaaacttctctagcaatcgaacaaattgatacaaaa-----------------aatgcaacatgatcttgaaggtgaaagt 77008  T
Q  239 cctcgatcaagttaatctcgttaggaaatatcggtagcgatggccaaaattgaccgatctaaataaagttaatgctaatgtgattgaagattttcaattt 338  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  77009 cctcgatcaagttaatctcgttaggaaacatcggtagcgatggccaaaattgaccgatctaaataaagttaatgctaatgtgattgaaggttttcaattt 77108  T
Q  339 attgactgttttcaaattttgttaattataagatcgaattcacataaatgttttgtgaacacatttttgacatcaacaacttatatactgatttttatgt 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  77109 attgactgttttcaaattttgttaattataagatcgaattcacataaatgttttgtgaacacattttcgacatcaacaacttatatactgatttttttgt 77208  T
Q  439 tatttttcctttcttcgg 456  Q
    | ||||||||||||||||    
T  77209 tgtttttcctttcttcgg 77226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 76794 - 76872
Alignment:
Q  7 aatctttctctgaaccaaatgcaattcttaactttcccatatagctcatgatcgttactgtgagactctgcaattccac 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  76794 aatctttctctgaaccaaatgcaattcttaactttcccatatagctcatgatcgttactgtgagactctgcaattccac 76872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 68743 - 68800
Alignment:
Q  21 ccaaatgcaattcttaactttcccatatagctcatgatcgttactgtgagactctgca 78  Q
    |||||||||||||||||||||||||| |||||||| || ||||  || ||||||||||    
T  68743 ccaaatgcaattcttaactttcccatgtagctcataatggttatggttagactctgca 68800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University