View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355-Insertion-13 (Length: 397)
Name: NF5355-Insertion-13
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355-Insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Complemental strand, 36640174 - 36639785
Alignment:
| Q |
7 |
accaagctcatgttataattgagtttgagaaaaatgacaaataagatcagagtttttt-ggcttgtaaatgtattttccaaatatgtttgttggaatatt |
105 |
Q |
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| T |
36640174 |
accaagctcatgttataattgagtttgagaaaaataacaaataagatcagagtttttttggcttgtaaatgtatttcccaaatatgtttgttggaatatt |
36640075 |
T |
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| Q |
106 |
tttacattccagtttttatcaattgtcaaatcataaaagcatttgcaaaagaaacaggtttatgttattatttatactgtgtcatacaactctaatcaaa |
205 |
Q |
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| T |
36640074 |
tttacattccagtttttatcaattgtcaaatcataaaagcatttgcaaaagaaacaggtttatgttattatttatactgtgtcatacaactctaatcaaa |
36639975 |
T |
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| Q |
206 |
ctttgataaatagaagaaaatagtctggattagaatgacatattttctggcaaatgagtgttgatgtaatttccagtgagaaattgtgatgcaacatatc |
305 |
Q |
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| T |
36639974 |
ctttgataaatagaagaaaatagtctggattagaatgacatattttctggcaaatgagtgttgatgtaatttccagtgagaatttgtgatgcaacatatc |
36639875 |
T |
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| Q |
306 |
gatttttggcctcggtaaaatgaactccgtcccagcttcatacacactactattattgcaacctttggctgtaactatggtcccatttaa |
395 |
Q |
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| T |
36639874 |
gatttttggcctcggtaaaatgagctccgtcccagcttcatacacactactattattgcaacctttggctgtaactatggtgccatttaa |
36639785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 392
Target Start/End: Complemental strand, 36635247 - 36635096
Alignment:
| Q |
242 |
gacatattttctggcaaatgagtgttgatgtaatttccagtgagaaattgtgatgcaacatatcgatttttggcctcggtaaaatgaactccgtcccagc |
341 |
Q |
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| T |
36635247 |
gacatcttttatgacaaatcagtgttggagtagtttctggtgagaatttgtgatgcaacatattgatttgaagcctcagtgtaatgagtcccgtcccagc |
36635148 |
T |
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| Q |
342 |
tt-catacacactactattattgcaacctttggctgtaactatggtcccatt |
392 |
Q |
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| T |
36635147 |
ttacatacacaccgctatcattgcaaccttttgctgtaattgtggtcccatt |
36635096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 36636780 - 36636717
Alignment:
| Q |
247 |
attttctggcaaatgagtgttgatgtaatttccagtgagaaattgtgatgcaacatatcgattt |
310 |
Q |
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| T |
36636780 |
attttctgacaaatgagtgttggagtaattttcggtgaaaatttatgatgcaacatatcgattt |
36636717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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