View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355-Insertion-14 (Length: 353)
Name: NF5355-Insertion-14
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355-Insertion-14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 28740638 - 28740987
Alignment:
| Q |
8 |
aatatgcctctagttacatcagtagcctaagtattctcgactatctaagtcgattctcaaa---gttcccatttctaagggttagaattctacgaaagta |
104 |
Q |
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| T |
28740638 |
aatatgcctctagttacatcagtaacctaactattctcgactatctaagtcgattctctattatgttcccatttctaagggttagaattttacgaaagta |
28740737 |
T |
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| Q |
105 |
ttttagacatatacatatataagctaaactcttgtgtgttacgcatcgctaacttatgcctatactcactttacattggttattttctgtttacaaagta |
204 |
Q |
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| T |
28740738 |
ttttagacatatacatatataagctaaactcttgtgtgttacgcatcgctaacttatgcctatactcactttacattggttattttctgtttacaaagta |
28740837 |
T |
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| Q |
205 |
gtcctcctgaacttgcaattaggtccctgagtatgaacagtgcacttttagaaaacactttattgcacaagattgctcgcttggagaagtttacgtcacc |
304 |
Q |
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| T |
28740838 |
gtcctcctgaacttgcaattaggtccctgagtatgaacagcgcacttttagaaaacactttattgcacaagattgctcgcttggagaagtttacgttacc |
28740937 |
T |
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| Q |
305 |
tttttgagctgccttcacc-aaatgccctagacaacccctttctccctcc |
353 |
Q |
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| T |
28740938 |
tttttgagctgccttcaccaaaatgccctagacaacccctttctccctcc |
28740987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 271
Target Start/End: Complemental strand, 23695833 - 23695598
Alignment:
| Q |
42 |
tctcgactatctaagtcgattctc----aaagttcccatttctaagggttagaattctacgaaagtatttt-agacatatacatatataagctaaactct |
136 |
Q |
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| T |
23695833 |
tctcgactatctgagtcgagtctctactaaaattctcatttctaagggttagaatccaacccgagtaatgtcatacatatacatatataagttaaactct |
23695734 |
T |
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| Q |
137 |
tgtgtgttacgcatcgctaacttatgcctatactcactttacattggttattttctgtttacaaagtagtcctcctgaacttgcaattaggtccctgagt |
236 |
Q |
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| T |
23695733 |
cgtgtgttacgcattgatatcttatgcctatactgactttacattggttactttcaatttacaaaataatcatcctgaaattgcaattaggtccctgagt |
23695634 |
T |
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| Q |
237 |
atgaacagtgcac-ttttagaaaacactttattgca |
271 |
Q |
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| T |
23695633 |
atgaacagtgcactttttagaaaatactttactgca |
23695598 |
T |
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