View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5355-Insertion-2 (Length: 985)

Name: NF5355-Insertion-2
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5355-Insertion-2
NF5355-Insertion-2
[»] chr4 (8 HSPs)
chr4 (8-669)||(9360684-9361355)
chr4 (701-819)||(9361376-9361493)
chr4 (814-985)||(9361532-9361697)
chr4 (480-517)||(913244-913281)
chr4 (480-517)||(12431280-12431317)
chr4 (480-517)||(42408831-42408868)
chr4 (480-518)||(12437743-12437781)
chr4 (480-517)||(48303807-48303844)
[»] chr8 (3 HSPs)
chr8 (480-517)||(37207434-37207471)
chr8 (480-518)||(21245400-21245438)
chr8 (480-517)||(27682022-27682059)
[»] chr6 (1 HSPs)
chr6 (480-517)||(23425206-23425243)
[»] chr1 (3 HSPs)
chr1 (480-517)||(28516998-28517035)
chr1 (480-517)||(38988824-38988861)
chr1 (816-848)||(47808012-47808044)
[»] scaffold0258 (1 HSPs)
scaffold0258 (480-518)||(1668-1706)
[»] chr7 (1 HSPs)
chr7 (480-518)||(29183249-29183287)
[»] chr3 (3 HSPs)
chr3 (480-518)||(2980632-2980670)
chr3 (480-518)||(39873045-39873083)
chr3 (885-965)||(32378715-32378791)


Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 8 - 669
Target Start/End: Original strand, 9360684 - 9361355
Alignment:
Q  8 gtttttgtgttggaatttggtttttctacacgtatgccaaaatcttgctagctaaagttgcaaagaactaaacatgttgcatgtgagatatgacagtaca 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9360684 gtttttgtgttggaatttggtttt-ctacacgtatgccaaaatcttgctagctaaagttgcaaagaactaaacatgttgcatgtgagatatgacagtaca 9360782  T
Q  108 catggatcaaactacacattgggaggaattgtatatgggatgaaatatataggatgtaatatacttatttggttattaaaactttcaaaattttctccac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9360783 catggatcaaactacacattgggaggaattgtatatgggatgaaatatataggatgtaatatacttatttggttattaaaactttcaaaattttctccac 9360882  T
Q  208 ttagtttgagacttatttaggatatgttgtttggagttgaataatgagctcacaaaacgattatgttgggtatgaatatacatataagaaagtaagtgtc 307  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9360883 ttagtttgaggcttatttagtatatgttgtttggagttgaataatgagctcacaaaacgaatatgttgggtatgaatatacatataagaaagtaagtgtc 9360982  T
Q  308 ttgag---ataatgaacatttatttactaataagtttgctaattacaattttgatcaattagttctctcaatattgtatgggactgaaaaagcagttgga 404  Q
    |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9360983 ttgagtcaataatgaacatttatttactaataagtttgctaattacaattttgatcaattagttctctcaatattgtatgggactgaaaaagcagttgga 9361082  T
Q  405 aaaagagatagttagaataagttattaatattattatctcatt-------ttatccttgtacaaagcaatatgaatcaaacattcaaaagataatttatt 497  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9361083 aaaagagatagttagaataagttattaatattattatctcatttattttattatccttgtacaaagcaatatgaatcaaacattcaaaagataatttatt 9361182  T
Q  498 tgcaaagtttagcaaaccaat-accaattgctaacaaatttcaatcacaattgatgctcctattggacaatctatcgttggaaattattttcaaccatgc 596  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||    
T  9361183 tgcaaagtttagcaaaccaatcaccaattgctaacaaatttcaatcacaattgatgctcctatttgacaatttatcattggaaattattttcaaccatgc 9361282  T
Q  597 aatcagtgtgaaacaatattggttccaacaataaatattctcaaacaagaaagatagcaaaaaagcaagatga 669  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9361283 aatcagtgtgaaacaatattggttccaacaataaatattctcaaacaagaaagagagcaaaaaagcaagatga 9361355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 701 - 819
Target Start/End: Original strand, 9361376 - 9361493
Alignment:
Q  701 ttgattttttagctttataaaaacatattaggtacattaaattttgtgaaaataaagacatctcaataaataatgacatggataaaatgcaattgaatcg 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9361376 ttgattttttagctttataaaaacatattaggtacattaaattttgtgaaaataaagacatctcaataaataatgacatggataaaatgtaattgaatcg 9361475  T
Q  801 aaaatgaagtcaatgatga 819  Q
     ||||||||||||||||||    
T  9361476 -aaatgaagtcaatgatga 9361493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 814 - 985
Target Start/End: Original strand, 9361532 - 9361697
Alignment:
Q  814 tgatgagccgtgctatttaaagcgaatgaaaacattcctaagattggtcccgaataaatgagtagtcaatccaaaacaatgcatgtgcgggaattcaagg 913  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||| |||||||||||||||| |||||||||||    
T  9361532 tgatgagccgtgctatttaaagcgaatgaaaaca-tcctaagatt-gtcccgaataaacgagtattcaatcaaaaacaatgcatgtgc-ggaattcaagg 9361628  T
Q  914 gaggaagagggatatattagcatgagaagaagaagatggaaaatagccttcgggaaggattcatgtgtaaat 985  Q
     |   |||||||||||||| |||||||   ||||||| ||||||||||||||||||||||||||||||||||    
T  9361629 aaaagagagggatatattaccatgaga--gagaagat-gaaaatagccttcgggaaggattcatgtgtaaat 9361697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 517
Target Start/End: Complemental strand, 913281 - 913244
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaa 517  Q
    |||||||||||||| |||||||||||||||||||||||    
T  913281 ttcaaaagataattcatttgcaaagtttagcaaaccaa 913244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 517
Target Start/End: Complemental strand, 12431317 - 12431280
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaa 517  Q
    |||||||||||||| |||||||||||||||||||||||    
T  12431317 ttcaaaagataattcatttgcaaagtttagcaaaccaa 12431280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 42408831 - 42408868
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaa 517  Q
    |||||||||||||| |||||||||||||||||||||||    
T  42408831 ttcaaaagataattcatttgcaaagtttagcaaaccaa 42408868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 480 - 518
Target Start/End: Complemental strand, 12437781 - 12437743
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaat 518  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  12437781 ttcaaaagataattcatttgcaaagcttagcaaaccaat 12437743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 480 - 517
Target Start/End: Complemental strand, 48303844 - 48303807
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaa 517  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  48303844 ttcaaaagataattcattcgcaaagtttagcaaaccaa 48303807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 37207434 - 37207471
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaa 517  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37207434 ttcaaaagataattcatttgcaaagtttagcaaaccaa 37207471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 480 - 518
Target Start/End: Original strand, 21245400 - 21245438
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaat 518  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  21245400 ttcaaaagataattcatttgcaaagcttagcaaaccaat 21245438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 480 - 517
Target Start/End: Complemental strand, 27682059 - 27682022
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaa 517  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  27682059 ttcaaaagataattcatttgcaaagtctagcaaaccaa 27682022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 23425206 - 23425243
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaa 517  Q
    |||||||||||||| |||||||||||||||||||||||    
T  23425206 ttcaaaagataattcatttgcaaagtttagcaaaccaa 23425243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 28516998 - 28517035
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaa 517  Q
    |||||||||||||| |||||||||||||||||||||||    
T  28516998 ttcaaaagataattcatttgcaaagtttagcaaaccaa 28517035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 38988824 - 38988861
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaa 517  Q
    |||||||||||||| |||||||||||||||||||||||    
T  38988824 ttcaaaagataattcatttgcaaagtttagcaaaccaa 38988861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 816 - 848
Target Start/End: Complemental strand, 47808044 - 47808012
Alignment:
Q  816 atgagccgtgctatttaaagcgaatgaaaacat 848  Q
    |||||||||||||||||||||||||||||||||    
T  47808044 atgagccgtgctatttaaagcgaatgaaaacat 47808012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 480 - 518
Target Start/End: Complemental strand, 1706 - 1668
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaat 518  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  1706 ttcaaaagataattcatttgcaaagcttagcaaaccaat 1668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 480 - 518
Target Start/End: Original strand, 29183249 - 29183287
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaat 518  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  29183249 ttcaaaagataattcatttgcaaagcttagcaaaccaat 29183287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 480 - 518
Target Start/End: Complemental strand, 2980670 - 2980632
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaat 518  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  2980670 ttcaaaagataattcatttgcaaagcttagcaaaccaat 2980632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 480 - 518
Target Start/End: Original strand, 39873045 - 39873083
Alignment:
Q  480 ttcaaaagataatttatttgcaaagtttagcaaaccaat 518  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  39873045 ttcaaaagataattcatttgcaaagtttagcaaatcaat 39873083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 885 - 965
Target Start/End: Original strand, 32378715 - 32378791
Alignment:
Q  885 caaaacaatgcatgtgcgggaattcaagggaggaagagggatatattagcatgagaagaagaagatggaaaatagccttcg 965  Q
    |||||||||||||||| || ||||||||| ||  |||||||||||| |||||||||   ||||||| ||||||||||||||    
T  32378715 caaaacaatgcatgtgagg-aattcaaggaagagagagggatatatcagcatgaga--gagaagat-gaaaatagccttcg 32378791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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