View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355-Insertion-4 (Length: 772)
Name: NF5355-Insertion-4
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 666; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 8 - 677
Target Start/End: Original strand, 39976770 - 39977439
Alignment:
| Q |
8 |
caaaatactccttaagtgctctatgcttaacaagtaagccagaactagtgagaaaaccagtgaagtagcaaccaaaagtgtgtaactctgtgcctaaaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39976770 |
caaaatactccttaagtgctctatgcttaacaagtaagccagaactagtgagaaaaccagtgaagtagcaaccaaaagtgtgtaactctgtgcctaaaac |
39976869 |
T |
|
| Q |
108 |
atcaccgacactcaaatactctttcaaaaatccttctaccataactctaggcacacttgtgataacaactttagacccagctgaagcaagaatctcataa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39976870 |
atcaccgacactcaaatactctttcaaaaatccttctaccataactctaggcacacttgtgataacaactttagacccagctgaagcaagaatctcataa |
39976969 |
T |
|
| Q |
208 |
acttgaagattaagattctctaaataaaactttggtaaaacagcccttgaaacattttccatgtcctttattcttaaaccacaaaaggttataaaagtca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39976970 |
acttgaagattaagattctctaaataaaactttggtaaaacagcccttgaaacattttccatgtcctttattcctaaaccacaaaaggttataaaagtca |
39977069 |
T |
|
| Q |
308 |
taatctttagttttaactcatgatcacaaatcaagagtaaaggacaagacataagcaagaaaaatgctctaaaaatgctgccaccttcaaaagcaacaag |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39977070 |
taatctttagttttaactcatgatcacaaatcaagagtaaaggacaagacataagcaagaaaaatgctctaaaaatgctgccaccttcaaaagcaacaag |
39977169 |
T |
|
| Q |
408 |
catgaaataaggaaaaaatgaatgagaccttaataggactctatgaatgtcacaaacaattgtttgtgacattctaccttgtaaatcacattttgttata |
507 |
Q |
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| T |
39977170 |
catgaaataaggaaaaaatgaatgagaccttaataggactctatgaatgtcacaaacaattgtttgtgacattctaccttgtaaatcacattttgttata |
39977269 |
T |
|
| Q |
508 |
ctaggaaaagaacaaggttgatgaggtggtttagatgaaagataagctaaattaaaaccataacttttcatttttcttgcagctctatagtatgaatttg |
607 |
Q |
| |
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| T |
39977270 |
ctaggaaaagaacaaggttgatgaggtggtttagatgaaagataagctaaattaaaaccataacttttcatttttcttgcagctctatagtatgaatttg |
39977369 |
T |
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| Q |
608 |
caagtagttggtacaaaaccaaatctacaagccttagaagaaccattggaaacatcatgataaatatttc |
677 |
Q |
| |
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| T |
39977370 |
caagtagttggtacaaaaccaaatctacaagccttagaagaaccattggaaacatcatgataaatatttc |
39977439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 698 - 772
Target Start/End: Original strand, 39977475 - 39977549
Alignment:
| Q |
698 |
ttttgttgttgatttttgagaaagcaaaaagtaaatagaaagattaaggataggaattggaaatgtgtgtgtctg |
772 |
Q |
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| T |
39977475 |
ttttgttgttgatttttgagaaagcaaaaagtaaatagaaagattaaggataggaattggaaatgtgtgtgtctg |
39977549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 481
Target Start/End: Complemental strand, 39977243 - 39977214
Alignment:
| Q |
452 |
gaatgtcacaaacaattgtttgtgacattc |
481 |
Q |
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| T |
39977243 |
gaatgtcacaaacaattgtttgtgacattc |
39977214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 373 - 497
Target Start/End: Complemental strand, 16193356 - 16193232
Alignment:
| Q |
373 |
gctctaaaaatgctgccaccttcaaaagcaacaagcatgaaataaggaaaaaatgaatgagaccttaataggactctatgaatgtcacaaacaattgttt |
472 |
Q |
| |
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||||| |||||||| ||||||||||| ||||| | ||||||||||||||| || |||||| | |||| ||||| |||||||| |||||||||| ||||| |
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| T |
16193356 |
gctcttaaaatgctaccaccttcaaaggcaactaacatgaaataaggaaagaaataatgagtctttaagaggacactatgaatatcacaaacaagtgttt |
16193257 |
T |
|
| Q |
473 |
gtgacattctaccttgtaaatcaca |
497 |
Q |
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||||| |||||||| |||||||| |
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| T |
16193256 |
gtgactctctaccttccaaatcaca |
16193232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 279
Target Start/End: Complemental strand, 16193668 - 16193450
Alignment:
| Q |
61 |
aaaccagtgaagtagcaaccaaaagtgtgtaactctgtgcctaaaacatcaccgacactcaaatactctttcaaaaatccttctaccataactctaggca |
160 |
Q |
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||||||||||||||||| |||| |||||||||||||||| | | || |||| | || ||||||| || || | ||| ||||| |||||||||||||||| |
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| T |
16193668 |
aaaccagtgaagtagcatccaacagtgtgtaactctgtggcaacaatatcatcaccattcaaatattccttaagaaacccttccaccataactctaggca |
16193569 |
T |
|
| Q |
161 |
cacttgtgataacaactttagacccagctgaagcaagaatctcataaacttgaagattaagattctctaaataaaactttggtaaaacagcccttgaaac |
260 |
Q |
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||| |||| | |||| || |||| |||| | | || || |||| ||| ||| ||||| ||||| | ||||||||||||||||| |||||| || |
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| T |
16193568 |
cacaagtgaagaaaactctacaccctactgagaccaaaacctgataagctttaaggttaaggttctccatgtaaaactttggtaaaactacccttgcaat |
16193469 |
T |
|
| Q |
261 |
attttccatgtcctttatt |
279 |
Q |
| |
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||||||||||||| ||| |
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| T |
16193468 |
catttccatgtccttaatt |
16193450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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