View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355-Insertion-5 (Length: 760)
Name: NF5355-Insertion-5
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355-Insertion-5 |
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| [»] scaffold0627 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 8 - 727
Target Start/End: Complemental strand, 2626260 - 2625541
Alignment:
| Q |
8 |
caatccataagtgattccaacccttttgagaatccaattatattgttatcatggctccattaagctcagcagtgagtgagtttcctaagccaagattaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
2626260 |
caatccataagtgattccaacccttttgagaatccaattatattgttatcatggctccattaagcttagcagtgagggagtttcctaagccaagattaaa |
2626161 |
T |
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| Q |
108 |
agaaaaggctcctaagaatttagcatcacagtctctaacaacacctccacaagaggagggaccaggattacctttagaagctccatctatattacatttt |
207 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2626160 |
agaaaaggctcctaagaatttagcattacagtctccaacaacacctccacaagaggagggaccaggattacctttagaagctccatctatattacatttt |
2626061 |
T |
|
| Q |
208 |
atccaattaaggataggtggctgccaaaggtcttccttaattttaggagcattttccaatcttaagctagccgagaaatctttaaggaggacaaaatctt |
307 |
Q |
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||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2626060 |
atcaaattaaggataggtggctgtcaaaggacttccttaattttaggagcatttcccaatcttaagctagacgagaaatctttaaggaggacaaaatctt |
2625961 |
T |
|
| Q |
308 |
ggatggaggatcttgaagccaatctagcacatttgcctgacataggagtgacagaaatgatgagattgattgcagttttgtaattgatctttctatcttc |
407 |
Q |
| |
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|||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2625960 |
ggatggaggatcatgaagccagtctagcacattttcctgacatagaagtgacagaaatgatgagattgattgcagttctgtaattgatctttctatcttc |
2625861 |
T |
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| Q |
408 |
aaattctttgattcctacagtaccaaattatattgaaacaattgacgataccaaagagaactactaacttgcacaggggagaccagcctctagtgcaaag |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
2625860 |
aaattctttgattcctacagtaccaaattatattgaaacaattgtcgatacctgagagaaccactaacttgcataggggagaccagcctctagtgcaaag |
2625761 |
T |
|
| Q |
508 |
atcaatagcctcatgaatggtattaaagttgcattgcatttcaagatattgttgagtcattgccaaatatgaatagaaaactcacatttaaagaaaatgt |
607 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2625760 |
gtcaatagcctcaacaatggtattaaagttgcactgcatttcaaaatattgttaagccattgccaaatatgaatagaaaactcacatttaaagaaaatgt |
2625661 |
T |
|
| Q |
608 |
gcttagatgtttcaatgttagagttacagagattgcacattgaagacaaataacaacctcttacagataagttgtcatcagtaggtaacttattatgcaa |
707 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| ||| |
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| T |
2625660 |
gcttagatgtttcaatgttagagttacagagattgcacattgaagacaaataacaaccttttgtagataacttgtcatcagtaggtaacttattattcaa |
2625561 |
T |
|
| Q |
708 |
gcttctccaaatcaataaag |
727 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2625560 |
gcttctccaaatcaataaag |
2625541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 154 - 457
Target Start/End: Complemental strand, 9299 - 8995
Alignment:
| Q |
154 |
ccacaagaggagggaccaggattacctttagaagctccatctatattacattttatccaattaaggataggtggctgccaaaggtcttccttaattttag |
253 |
Q |
| |
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|||||||| || ||||||| |||||||| |||||||||| |||||||||||||| ||| ||||||||||| |||||||| | | ||||| || || | |
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| T |
9299 |
ccacaagattagagaccagggttaccttttgaagctccatatatattacattttacccagttaaggatagggggctgccacaaaacctccttgatctttg |
9200 |
T |
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| Q |
254 |
gagcattttccaatcttaagctagccgagaaatctttaaggaggacaaaatcttggatggaggatcttgaagccaatctagcacatttgcctgacatagg |
353 |
Q |
| |
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|||||||| |||||||||| ||| | |||||| | || || ||||||||||| | ||| |||| | | ||||| | ||||| || || || || |
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| T |
9199 |
gagcatttcccaatcttaacctaacagagaaagccttgagcaggacaaaatcataaatgttggatatagcagccagcttggcacagttacccatcaaaga |
9100 |
T |
|
| Q |
354 |
agtgacagaaatgatgagattgattgcagttttgtaattgatctttctatcttcaaa--ttctttgattcctacagtaccaaattatattgaaacaattg |
451 |
Q |
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|||| || ||||||| | |||||| ||||||||| | || ||||||| ||||||||| |||||||||||| ||||||| |||| |||||||||||||| |
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| T |
9099 |
agtgccataaatgataaaattgatagcagttttgaagttaatctttccatcttcaaatcttctttgattccggcagtacc-aattgtattgaaacaattg |
9001 |
T |
|
| Q |
452 |
acgata |
457 |
Q |
| |
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| |||| |
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| T |
9000 |
atgata |
8995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 15907489 - 15907590
Alignment:
| Q |
8 |
caatccataagtgattccaacccttttgagaatccaattatattgttatcatggctccattaagctcagcagtgagtgagtttcctaagccaagattaaa |
107 |
Q |
| |
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||||| |||||||||||||||| ||||||||| ||| | ||||| || ||| |||||||| |||| |||||||||||| || |||| |||||||||||| |
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| T |
15907489 |
caatcaataagtgattccaacctttttgagaagccatctctattgctaccatagctccattgagcttagcagtgagtgaattgcctatgccaagattaaa |
15907588 |
T |
|
| Q |
108 |
ag |
109 |
Q |
| |
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|| |
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| T |
15907589 |
ag |
15907590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 18285589 - 18285485
Alignment:
| Q |
96 |
gccaagattaaaagaaaaggctcctaagaatttagcatcacagtctctaacaacacctccacaagaggagggaccaggattacctttagaagctccatct |
195 |
Q |
| |
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|||||| |||||||| |||||||||| ||| | ||||| ||| ||||||| || ||||||||||| || || ||||| |||||||| || ||||||||| |
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| T |
18285589 |
gccaaggttaaaagagaaggctcctaggaagtcagcattacaatctctaaacacccctccacaagaagaaggcccagggttacctttggatgctccatct |
18285490 |
T |
|
| Q |
196 |
atatt |
200 |
Q |
| |
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||||| |
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| T |
18285489 |
atatt |
18285485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 30880948 - 30881013
Alignment:
| Q |
150 |
acctccacaagaggagggaccaggattacctttagaagctccatctatattacattttatccaatt |
215 |
Q |
| |
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|||||||||||| ||||| || |||||||| || ||||| ||||| ||||||||||| | |||||| |
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| T |
30880948 |
acctccacaagatgagggtccgggattaccattggaagcaccatcaatattacatttaacccaatt |
30881013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 721
Target Start/End: Original strand, 22163027 - 22163068
Alignment:
| Q |
680 |
tgtcatcagtaggtaacttattatgcaagcttctccaaatca |
721 |
Q |
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|||||||||| || | |||||||||||||||||||||||||| |
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| T |
22163027 |
tgtcatcagttgggagcttattatgcaagcttctccaaatca |
22163068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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