View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5355-Insertion-7 (Length: 538)
Name: NF5355-Insertion-7
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355-Insertion-7 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold1880 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 48698051 - 48697635
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48698051 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtga |
48697952 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48697951 |
cagtcagagtgccttgcatattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggag |
48697852 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
48697851 |
ggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgt |
48697752 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaacacaggaaagt |
407 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697751 |
atggcctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaacacaggaaagt |
48697652 |
T |
|
| Q |
408 |
ggtaaagcacacttttgt |
425 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
48697651 |
ggtaaagc-cacttttgt |
48697635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 30946413 - 30945997
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30946413 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtga |
30946314 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30946313 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggag |
30946214 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
30946213 |
ggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgt |
30946114 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaacacaggaaagt |
407 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| || |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30946113 |
atggcctattggaaacgtagcaaccgaagtcggtaaggtagagagattttgagagctcacaaaagtgactttaagtgggagactgtgaacacaggaaagt |
30946014 |
T |
|
| Q |
408 |
ggtaaagcacacttttgt |
425 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
30946013 |
ggtaaagc-cacttttgt |
30945997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 42269990 - 42270380
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42269990 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtga |
42270089 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42270090 |
cagtcagagtgccttgcatattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggaa |
42270189 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | || |
|
|
| T |
42270190 |
ggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatctttgt |
42270289 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
398 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270290 |
atggcctattggaaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaaca |
42270380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 2002975 - 2003267
Alignment:
| Q |
13 |
atggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtgacagtc |
112 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||| || |||||||| |||||||||||||||| |
|
|
| T |
2002975 |
atggcagctatgcaagcttgcaaggaagctatttggatacaaagactaatggaagaactcgggcacagtcaacaacaaattgttgtgtattgtgacagtt |
2003074 |
T |
|
| Q |
113 |
agagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaaggaag |
212 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |||||||| || || |||||||||| |||||||| ||||||||||||||||| |||||| |||| || |
|
|
| T |
2003075 |
agagtgcattgcatattgcaaggaatccattctttcattcgagaacaaaacacatagatgttcaataccattttgttcgagaagtggtagagaaagggag |
2003174 |
T |
|
| Q |
213 |
tgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctc |
305 |
Q |
| |
|
||| ||||||||||| |||||||| || || || |||||||||| ||||||||| | ||||| |||||| |||| ||||||||||||||| |
|
|
| T |
2003175 |
tgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgttgacaaatttacatggtgtcgatcctc |
2003267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 391 - 438
Target Start/End: Complemental strand, 24520624 - 24520577
Alignment:
| Q |
391 |
tgtgaacacaggaaagtggtaaagcacacttttgtggaattaccacat |
438 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520624 |
tgtgaacacatgaaagtggtaaagcacacttttgtggaattaccacat |
24520577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 512
Target Start/End: Original strand, 42265729 - 42265778
Alignment:
| Q |
464 |
caatatggctttgtctttgaaactaatttt-cggtgcactattgtcaaca |
512 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
42265729 |
caatatgactttgtctttgaaagtaatttttcggtgcactattgtcaaca |
42265778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 512
Target Start/End: Original strand, 42270448 - 42270497
Alignment:
| Q |
464 |
caatatggctttgtctttgaaactaatttt-cggtgcactattgtcaaca |
512 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
42270448 |
caatatgactttgtctttgaaagtaatttttcggtgcactattgtcaaca |
42270497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 30950738 - 30950703
Alignment:
| Q |
389 |
attgtgaacacaggaaagtggtaaagcacacttttgt |
425 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30950738 |
attgtgaacacaggaaagtggtaaagc-cacttttgt |
30950703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 9440321 - 9439931
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9440321 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtga |
9440222 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9440221 |
cagtcagagtgccttgcatattgcaaggaatccagcttttcattcaaggacgaaacacataggcattcaatatcattttgttcgcgaagtagtagaggaa |
9440122 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9440121 |
ggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgt |
9440022 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
398 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440021 |
atggcctattggaaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaaca |
9439931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 24594716 - 24594424
Alignment:
| Q |
13 |
atggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtgacagtc |
112 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| |||||||| |||| || |||||||| ||||||||||||||||| |
|
|
| T |
24594716 |
atggcagctacacaagcttgcaaggaagctatttggatacaaagactaatggaagaactcggccacagtcaacaacaaattgttgtgtattgtgacagtc |
24594617 |
T |
|
| Q |
113 |
agagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaaggaag |
212 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| || || ||||||||||| |||||||| ||||||||||||||||| |||||| |||| || |
|
|
| T |
24594616 |
agagtgcattgcacattgcaaggaatccagtctttcattcgagaacaaaacacataggtgttcaataccattttgttcgagaagtggtagagaaagggag |
24594517 |
T |
|
| Q |
213 |
tgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctc |
305 |
Q |
| |
|
||| ||||||||||| |||||||| || || || |||||||||| ||||||||| | ||||| ||||||| |||| ||||||| ||||||| |
|
|
| T |
24594516 |
tgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgctgacaaatttacatggtgtagatcctc |
24594424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 9439863 - 9439814
Alignment:
| Q |
464 |
caatatggctttgtctttgaaactaatttt-cggtgcactattgtcaaca |
512 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
9439863 |
caatatgactttgtctttgaaagtaatttttcggtgcactattgtcaaca |
9439814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 9444583 - 9444534
Alignment:
| Q |
464 |
caatatggctttgtctttgaaactaatttt-cggtgcactattgtcaaca |
512 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
9444583 |
caatatgactttgtctttgaaagtaatttttcggtgcactattgtcaaca |
9444534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 24594404 - 24594372
Alignment:
| Q |
364 |
tcacaaaagtgactttaagtgggagattgtgaa |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24594404 |
tcacaaaagtgactttaagtgggagattgtgaa |
24594372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 54545232 - 54545622
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
54545232 |
agtacatggcagctacccaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattattgtgtattgtga |
54545331 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54545332 |
cagtcagagtgcattgcacattgcaaggaattcaacttttcattcaaggacgaaacacataggcgttcaatatcattttattcgagaagtagtagaggaa |
54545431 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545432 |
ggaagcgtggatatgcagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
54545531 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
398 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545532 |
atggcctattggaaacatagcaactgaagttggcaaggtagagaggctttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
54545622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 5819505 - 5819065
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5819505 |
agtacatggcagctacccaagcatgcaaggaagctatctggatgcaaaggttaatggaggaactcgggcacaagcaggagaaaattactgtgtattgtga |
5819406 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5819405 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaagcacataggcgttcaatatcattttgttcgagaagtagtggaggag |
5819306 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5819305 |
ggaagcgtggatatgcaaaagattcacactaatgataacctagcagttgtaatgacaaagccgatcaacactgacaagtttatatggcgtcgatcctcgt |
5819206 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtg----------aac |
397 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
5819205 |
atggcctattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtaactttaagtgggagattgtgaacatgtgtgaac |
5819106 |
T |
|
| Q |
398 |
acaggaaagtggtaaagcacacttttgtggaattaccacat |
438 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819105 |
acatgaaagtggtaaagcacacttttgtggaattaccacat |
5819065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 42589040 - 42589332
Alignment:
| Q |
13 |
atggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtgacagtc |
112 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
42589040 |
atggcagctacgcaagcttgcaaggaagctatttggatacaaagactaatggaagaactcgggcacagtcaacaacaaattgttgtgtattgtgacagtc |
42589139 |
T |
|
| Q |
113 |
agagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaaggaag |
212 |
Q |
| |
|
| ||||| |||||||||||||||||||||| |||||||| || || ||||||||||| |||||||| ||||||||||||||||| |||||| |||| || |
|
|
| T |
42589140 |
atagtgcattgcacattgcaaggaatccagtctttcattcgagaacaaaacacataggtgttcaataccattttgttcgagaagtggtagagaaagggag |
42589239 |
T |
|
| Q |
213 |
tgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctc |
305 |
Q |
| |
|
||| ||||||||||| |||||||| || || || |||||||| | ||||||||| | ||||| ||||||| |||| ||||||| ||||||| |
|
|
| T |
42589240 |
tgttgatatgcagaaaattcacaccaaagacaatttagcagatattatgacaaagtcaatcaatgctgacaaatttacatggtgtagatcctc |
42589332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 391 - 438
Target Start/End: Complemental strand, 5823874 - 5823827
Alignment:
| Q |
391 |
tgtgaacacaggaaagtggtaaagcacacttttgtggaattaccacat |
438 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823874 |
tgtgaacacatgaaagtggtaaagcacacttttgtggaattaccacat |
5823827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 35975710 - 35975810
Alignment:
| Q |
116 |
gtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaaggaagtgt |
215 |
Q |
| |
|
||||||||||||||||||| |||||| | |||||||||||||| ||| | |||||||| ||||||||||||| || |||||||| | ||| ||||||| |
|
|
| T |
35975710 |
gtgccttgcacattgcaag-aatccaacgtttcattcaaggacaaaatagc-aggcgttcgatatcattttgtttgaaaagtagtaaatgaaagaagtgt |
35975807 |
T |
|
| Q |
216 |
gga |
218 |
Q |
| |
|
||| |
|
|
| T |
35975808 |
gga |
35975810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 524
Target Start/End: Original strand, 54545691 - 54545750
Alignment:
| Q |
465 |
aatatggctttgtctttgaaactaatttt-cggtgcactattgtcaacacaaattggttgg |
524 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
54545691 |
aatatgactttgtctttgaaagtaatttttcggtgcactattgtcaaca-aaattggttgg |
54545750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 396
Target Start/End: Original strand, 42589352 - 42589384
Alignment:
| Q |
364 |
tcacaaaagtgactttaagtgggagattgtgaa |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
42589352 |
tcacaaaagtgactttaagtgggagattgtgaa |
42589384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 25880945 - 25881030
Alignment:
| Q |
20 |
ctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtg |
106 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||| |||||| ||||||| ||| || ||||||| || |||||||| ||||||||||| |
|
|
| T |
25880945 |
ctacgcaagcttgctaggaagctatttggatacaaaggctaatggaagaa-tcaggcacaatcaacaacaaattgttgtgtattgtg |
25881030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 41722497 - 41722887
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41722497 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtga |
41722596 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41722597 |
cagtcagagtgccttgcatattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgcgaagtagtagaggag |
41722696 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
41722697 |
ggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgt |
41722796 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
398 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722797 |
atggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaaca |
41722887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 107 - 398
Target Start/End: Original strand, 34359375 - 34359666
Alignment:
| Q |
107 |
acagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagagga |
206 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34359375 |
acagtcagagtgccttacacattgcaaggaatccagcttttcattcaaggacgaagcacattggcgttcaatatcattttgttcgagaagtagtggagga |
34359474 |
T |
|
| Q |
207 |
aggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcg |
306 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34359475 |
gggaagcgtggatatgcaaaagattcacaccaatgataacctagcggatgtaatgacaaagccgatcaacgctgacaagtttatatggtgtcgatcctcg |
34359574 |
T |
|
| Q |
307 |
tatggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
398 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359575 |
tatggcctattggaaacgtagcaactggagttggcaaggtagagatactttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
34359666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 34356097 - 34356200
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
34356097 |
agtacatggcagctacccaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaagagaaaattactgtgtattgtga |
34356196 |
T |
|
| Q |
108 |
cagt |
111 |
Q |
| |
|
|||| |
|
|
| T |
34356197 |
cagt |
34356200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 29585826 - 29585787
Alignment:
| Q |
391 |
tgtgaacacaggaaagtggtaaagcacacttttgtggaatt |
431 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
29585826 |
tgtgaacacaggaaagtggtaaagc-cacttttgttgaatt |
29585787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 26977123 - 26976683
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
26977123 |
agtacatggcagctacccaagcatgcaaggaagctatctgggtgcaaaggttaatggaggaactcgggcacaagcaggagaaaattactgtgtattgtga |
26977024 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26977023 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaagcacataggtgttcaatatcattttgttcgagaagtagtggaggag |
26976924 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976923 |
ggaagcgtggatatgcaaaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
26976824 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtg----------aac |
397 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26976823 |
atggcctattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaac |
26976724 |
T |
|
| Q |
398 |
acaggaaagtggtaaagcacacttttgtggaattaccacat |
438 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976723 |
acatgaaagtggtaaagcacacttttgtggaattaccacat |
26976683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 27874939 - 27874549
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27874939 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtga |
27874840 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27874839 |
cagtcagagtgccttgcatattgcaaggaatccagcttttcattcaaggacgaaacacataggcattcaatatcattttgttcgcgaagtagtagaggaa |
27874740 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | || |
|
|
| T |
27874739 |
ggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatctttgt |
27874640 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
398 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874639 |
atggcctattggaaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaaca |
27874549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 109 - 396
Target Start/End: Original strand, 18967256 - 18967543
Alignment:
| Q |
109 |
agtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaag |
208 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| | |
|
|
| T |
18967256 |
agtcagagtgccttacacattgcaaggaatccaacttttcattcaaggacgaaacacataggcgttaaatatcattttgttcgacaagtagtggaggagg |
18967355 |
T |
|
| Q |
209 |
gaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgta |
308 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||| || |
|
|
| T |
18967356 |
gaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtgatgacaaaaccaatcaatgctgacaagtttatatggtgtcgatcctccta |
18967455 |
T |
|
| Q |
309 |
tggtctattggaaacgtagcaac-tgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaa |
396 |
Q |
| |
|
||| |||||| |||| ||||||| |||| | || ||||||||||||||||| | |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
18967456 |
tggcctattgaaaacatagcaacatgaa-tgggtaaggtagagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa |
18967543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 1472690 - 1472398
Alignment:
| Q |
13 |
atggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtgacagtc |
112 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||| ||||| || |||||||| ||||||||||||||||| |
|
|
| T |
1472690 |
atggcagctacgcaagcttgcaaggaagctatttggatacaaagactaatggaagaactcgtgcacagtcaacaacaaattgttgtgtattgtgacagtc |
1472591 |
T |
|
| Q |
113 |
agagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaaggaag |
212 |
Q |
| |
|
||||||| |||||||||||| | ||||||| |||||||| || || |||||||||| |||||||| |||||||||||||||||||||||| || | || |
|
|
| T |
1472590 |
agagtgcattgcacattgcatgtaatccagtctttcattcgagaacaaaacacatagatgttcaataccattttgttcgagaagtagtagagaaaaggag |
1472491 |
T |
|
| Q |
213 |
tgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctc |
305 |
Q |
| |
|
||| ||||||||||| |||||||| || || || |||||||||| ||||||||| | ||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
1472490 |
tgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgctgacaaatttacatggtgtcgatcctc |
1472398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 27 - 265
Target Start/End: Original strand, 21965489 - 21965725
Alignment:
| Q |
27 |
agcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtgacagtcagagtgccttgcac |
126 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||| ||| |||| |||| || ||| ||| ||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
21965489 |
agcatgcatggaaactatttggatgcgaaggttaattgagcaacttaggcataagcagcaacgaattattgtgtattg--acagtcagagtaccttgcac |
21965586 |
T |
|
| Q |
127 |
attgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaaggaagtgtggatatgcaga |
226 |
Q |
| |
|
||| ||||||||||| ||||||||||||| ||| | |||| ||||||||||||| |||||||| |||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
21965587 |
atttcaaggaatccaacttttcattcaagaacggagcacacaggcgttcaatattattttgtttgagaagtagtgaaggaatgaagggtggatatgcaga |
21965686 |
T |
|
| Q |
227 |
agattcacacaaatgataacctagcagatgtaatgacaa |
265 |
Q |
| |
|
| |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
21965687 |
atgctcacaccaatgataacctagaagatgtaatgacaa |
21965725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 30968569 - 30968628
Alignment:
| Q |
339 |
ggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
398 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968569 |
ggcaaggtagagagattttgagtgctcacaaaagtgactttaagtgggagattgtgaaca |
30968628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 279 - 405
Target Start/End: Original strand, 21966489 - 21966610
Alignment:
| Q |
279 |
tgacaagtttatatggtgtcgatcctcgtatggtctattggaaacgtagcaact-gaagttggcaaggtagagagattttgaatgctcacaaaagtgact |
377 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||| || ||||||||| || |
|
|
| T |
21966489 |
tgacaagtttgtatggtgtcgatcctcgtatgtt------gaaacgtagcaataaggagttggcaaggtagagagattttgaaatcttacaaaagtggct |
21966582 |
T |
|
| Q |
378 |
ttaagtgggagattgtgaacacaggaaa |
405 |
Q |
| |
|
||||||||| |||||||||| |||||| |
|
|
| T |
21966583 |
gtaagtgggatattgtgaacataggaaa |
21966610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 1234419 - 1234466
Alignment:
| Q |
391 |
tgtgaacacaggaaagtggtaaagcacacttttgtggaattaccacat |
438 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234419 |
tgtgaacacatgaaagtggtaaagcacacttttgtggaattaccacat |
1234466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 18967189 - 18967241
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggtta |
60 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
18967189 |
agtacattgcagctacccaagcatgcaatgaagctatttggatgcaaacgtta |
18967241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 512
Target Start/End: Complemental strand, 27874481 - 27874432
Alignment:
| Q |
464 |
caatatggctttgtctttgaaactaatttt-cggtgcactattgtcaaca |
512 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
27874481 |
caatatgactttgtctttgaaagtaatttttcggtgcactattgtcaaca |
27874432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 1472378 - 1472346
Alignment:
| Q |
364 |
tcacaaaagtgactttaagtgggagattgtgaa |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1472378 |
tcacaaaagtgactttaagtgggagattgtgaa |
1472346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 829566 - 829956
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
829566 |
agtacatggcagctacccaagcatgcaaggaagctatctggatgcaaaggttaatggaggaactcgggcacaagcaggagaaaattactgtgtattgtga |
829665 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829666 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
829765 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829766 |
ggaagcgtggatatgtagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
829865 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
398 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
829866 |
atggcctattggaaacatagcaactggagttggcaaggtagagagactttgaatgctcacaaaagtagctttaagtgggatattgtgaaca |
829956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 28715170 - 28715548
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
28715170 |
agtacatggcagctacccaagcatgcaaggaagctatttggatgcaaaggttaatggaggtactcgggcacaagcaggagcaaattactgtgtattgtga |
28715269 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
||| | ||||||||||| |||||| |||||| |||||||| ||| |||||||| |||||||||||||||||||||| ||| || ||||| |
|
|
| T |
28715270 |
tagttatagtgccttgca----------aatccaacttttcgttcaaggatgaagcacataggtgttcaatatcattttgttcgagtagt-gtggaggag |
28715358 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||| | |
|
|
| T |
28715359 |
gga-gtgtgaatatgcataagattcacaccaatgataacctagcagatgtaatgacaaagtcgatcaatgctgacaagtttctatagtgtcgatcctcat |
28715457 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
398 |
Q |
| |
|
|||| |||||| ||| |||||||| ||||||||| ||||||||||||||||||| || | ||| || ||||||||||||||||||||||| |
|
|
| T |
28715458 |
atggcctattgaaaatgtagcaacggaagttggcgaggtagagagattttgaattctaaaaaatgtagctttaagtgggagattgtgaaca |
28715548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 13841158 - 13840766
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
||||||||||| || | || || |||||||||| |||||| ||||||||||||||||||||||| ||||||||||| | ||||||||| |||||||||| |
|
|
| T |
13841158 |
agtacatggcatcttcccatgcttgcaaggaagttatttgaatgcaaaggttaatggaggaacttgggcacaaacaacatcaaattactatgtattgtga |
13841059 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
|| | ||| |||||| ||||||||||| ||| || ||||||||||||||| ||||||||| | ||||||||||||||||||| | ||||||| || ||| |
|
|
| T |
13841058 |
caattagaatgcctttcacattgcaagaaattca-tttttcattcaaggacaaaacacataagtgttcaatatcattttgttc-aaaagtagtcgacgaa |
13840961 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcct--- |
304 |
Q |
| |
|
|||||| ||||| ||||||||||||| |||| |||||||||| | ||||| ||||||| |||||||| || | |||||| ||||| ||||||||| |
|
|
| T |
13840960 |
ggaagtatggatgtgcagaagattcagacaagtgataacctaacggatgtggtgacaaaaccgatcaatgctaataagtttgtatggcgtcgatcctggg |
13840861 |
T |
|
| Q |
305 |
-cgtatggtctattggaaacgtagcaactgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaaca |
398 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||| ||||| ||||| | |||||||||||| |||||||| |||||||| |||| |
|
|
| T |
13840860 |
aagtatgacctattggaaacatagcaacaagagttggcaaggcagagaaattttagaagctcacaaaagtagatttaagtgagagattgtaaaca |
13840766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 28265 - 27877
Alignment:
| Q |
8 |
agtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
28265 |
agtacatggcagctactcaagcatgcaaggaagctatttggttgcaaaggtttatggaggaactcgtgcacaagcaggattaaattactgtgtattgtga |
28166 |
T |
|
| Q |
108 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28165 |
cagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtggaggag |
28066 |
T |
|
| Q |
208 |
ggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgt |
307 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||| |||||| || ||||| || ||||| |||||||||||||||||||||||||||| | |
|
|
| T |
28065 |
ggaagtgtggacatgcagaagattcacaccaatgataatctagtagatgtgattacaaaaccaatcaatgctgacaagtttatatggtgtcgatcctcct |
27966 |
T |
|
| Q |
308 |
atggtctattggaaacgtagcaac-tgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaa |
396 |
Q |
| |
|
|||| ||||||||||||||||||| |||| | ||||||||| |||||||||| | |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
27965 |
atggcctattggaaacgtagcaacatgaa-tgggcaaggtaaagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa |
27877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 396
Target Start/End: Complemental strand, 2324338 - 2323956
Alignment:
| Q |
7 |
aagtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtg |
106 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||| |
|
|
| T |
2324338 |
aagtacatggcagctacccaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaagcaggagaaaatcactttgtattgtg |
2324239 |
T |
|
| Q |
107 |
acagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagagga |
206 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||||| ||| || |||| | |||||| |||||||||||||||||||||||| |||| |
|
|
| T |
2324238 |
gcagtcagg------tggacattgcaaggaatccatcttttcattcaaagacaaagaacattgacgttca-tatcattttgttcgagaagtagtaaagga |
2324146 |
T |
|
| Q |
207 |
aggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcg |
306 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||| ||||| || ||||||||||||||||||||| ||| |
|
|
| T |
2324145 |
gggaagtgtggatatgcagaagatccacaccaatgataccctagcagatgtgatgacaaagccaatcaatgctaccaagtttatatggtgtcgatcatcg |
2324046 |
T |
|
| Q |
307 |
tatggtctattggaaacgtagcaac-tgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaa |
396 |
Q |
| |
|
||||| ||||||||||||||||||| |||| | |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2324045 |
tatggactattggaaacgtagcaacatgaa-tgggcaaggtagagagattttggaagctcacaaaagtggctttaagtgggagattgtgaa |
2323956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 7504988 - 7504696
Alignment:
| Q |
13 |
atggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtgacagtc |
112 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| ||||||| ||||| || |||||||| ||||||||||||||||| |
|
|
| T |
7504988 |
atggcagctacgcaagcttgcaaggaagctatttggatacaaagactaatggaagaactcgtgcacagtcaacaacaaattgttgtgtattgtgacagtc |
7504889 |
T |
|
| Q |
113 |
agagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaaggaag |
212 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| || || |||||||||| |||||||| ||||||||||||||||| |||||| |||| || |
|
|
| T |
7504888 |
agagtgcattgcacattgcaaggaatccagtctttcattcgagaacaaaacacatagatgttcaataccattttgttcgagaagtggtagagaaagggag |
7504789 |
T |
|
| Q |
213 |
tgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctc |
305 |
Q |
| |
|
||| |||||||| || |||||||| || || || |||||||||| ||||||||| | ||||| |||||||| |||| ||||||||||||||| |
|
|
| T |
7504788 |
tgttgatatgcaaaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatactgacaaatttacatggtgtcgatcctc |
7504696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 31 - 371
Target Start/End: Original strand, 22510027 - 22510368
Alignment:
| Q |
31 |
tgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtgacagtcagagtgccttgcacattg |
130 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||| |||||||||| |||||||||| |||||||||| |
|
|
| T |
22510027 |
tgcaaggaagctatttggatgataaggttaatggaggaactcgcgcacaagtatcaacaaattactttgtattgtgatagtcagagtgtcttgcacattt |
22510126 |
T |
|
| Q |
131 |
caaggaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaaggaagtgtggatatgcagaagat |
230 |
Q |
| |
|
|||| |||||| |||| |||| | ||||| |||| |||||||||||| |||||| || | ||| || ||||| ||| ||||||||||| |||||| |
|
|
| T |
22510127 |
caagcaatccaactttgtattccaagacgatgcacaaaggcgttcaataccatttttttgtattagttgtggaggagggacatgtggatatgccgaagat |
22510226 |
T |
|
| Q |
231 |
tcacacaaatgataacctagcagatgtaatgacaaag-ccgatcaacactgacaagtttatatggtgtcgatcctcgtatggtctattggaaacgtagca |
329 |
Q |
| |
|
||| || ||||||||| ||||||||| |||| |||| | ||||| | ||| |||||||||||||||| |||| | ||| ||||| |||| ||| | |
|
|
| T |
22510227 |
tcaaactgatgataaccaagcagatgtgatgaaaaagtctaatcaatattgataagtttatatggtgtcaatccctctgtggcctattcaaaacatagaa |
22510326 |
T |
|
| Q |
330 |
actgaagttggcaaggtagagagattttgaatgctcacaaaa |
371 |
Q |
| |
|
|| | ||||||||||||||||| |||||||| |||| ||||| |
|
|
| T |
22510327 |
acaggagttggcaaggtagagatattttgaaagctcccaaaa |
22510368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 37957033 - 37957162
Alignment:
| Q |
175 |
caatatcattttgttcgagaagtagtagaggaaggaagtgtggatatgcagaagattcacacaaatgataacctagcagatgtaatgacaaagccgatca |
274 |
Q |
| |
|
|||||||||| |||| | |||||||||||||||||||||||||| ||||| ||||||||| || ||| |||||| ||| ||||||||| | || | |
|
|
| T |
37957033 |
caatatcattatgtttgcgaagtagtagaggaaggaagtgtggacatgcaatagattcacaataaagattgtctagcaagtgtgatgacaaagtcaatta |
37957132 |
T |
|
| Q |
275 |
acactgacaagtttatatggtgtcgatcct |
304 |
Q |
| |
|
| ||| ||||||||||| |||||||||| |
|
|
| T |
37957133 |
atggtgataagtttatatgatgtcgatcct |
37957162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 7504676 - 7504644
Alignment:
| Q |
364 |
tcacaaaagtgactttaagtgggagattgtgaa |
396 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
7504676 |
tcacaaaagtaactttaagtgggagattgtgaa |
7504644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 31 - 305
Target Start/End: Original strand, 34973589 - 34973861
Alignment:
| Q |
31 |
tgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtgacagtcagagtgccttgcacattg |
130 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||| | ||||| || || | |||| |||||||| ||| ||| | |||| ||||||||||| |
|
|
| T |
34973589 |
tgcaaggaagctgtttggatgcaaaggttaatggagggacttagacacaagcatcaagacattattgtgtattatgaaagttaaagtgtcttgcacattg |
34973688 |
T |
|
| Q |
131 |
caaggaatccagctttt--cattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaaggaagtgtggatatgcagaag |
228 |
Q |
| |
|
| | |||||| ||||| |||||||||||||| || |||||| || ||||||||||| || |||||||||| || || ||||||||||||||| |||| |
|
|
| T |
34973689 |
tatgaaatccaacttttttcattcaaggacgaagcaaataggcatttaatatcattttatttgagaagtagtggaagagagaagtgtggatatgctgaag |
34973788 |
T |
|
| Q |
229 |
attcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctc |
305 |
Q |
| |
|
|||||||| |||||||||||| |||||| | |||||| ||||| | ||||||||||||||| ||| ||||||| |
|
|
| T |
34973789 |
attcacactaatgataacctaaaagatgtgacgacaaa----atcaatattgacaagtttatatgttgttgatcctc |
34973861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 35 - 405
Target Start/End: Complemental strand, 41413783 - 41413415
Alignment:
| Q |
35 |
aggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattactgtgtattgtgacagtcagagtgccttgcacattgcaag |
134 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||||||| |||| ||| ||||||||| ||| |||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
41413783 |
aggaagctattttgatgcaaatgttaattgaggaactcaaacacagacaataacaaattattgtatattgtgatagttagagtgtcttgcacattgcaag |
41413684 |
T |
|
| Q |
135 |
gaatccagcttttcattcaaggacgaaacacataggcgttcaatatcattttgttcgagaagtagtagaggaaggaagtgtggat-----atgcagaaga |
229 |
Q |
| |
|
|||||||| || ||||||||||| | || |||||||||||||||||||||||| ||||||| | || ||||||| ||||||| ||||| |||| |
|
|
| T |
41413683 |
taatccagccttccattcaaggacaaggcatgtaggcgttcaatatcattttgttc-agaagtaatggatgaaggaaatgtggatatgcaatgcaaaaga |
41413585 |
T |
|
| Q |
230 |
ttcacacaaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggtctattggaaacgtagca |
329 |
Q |
| |
|
| ||||| |||| ||||||| |||| || ||||| || ||||| ||||||||||||| | ||||| ||||| ||||||||| ||||| ||||| |
|
|
| T |
41413584 |
tacacactaatggtaacctaatagatcta---acaaaaccaatcaatggtgacaagtttata---tatcgattctcgtttggtctattagaaacatagca |
41413491 |
T |
|
| Q |
330 |
actgaagttggcaaggtagagagattttgaatgctcacaaaagtgactttaagtgggagattgtgaacacaggaaa |
405 |
Q |
| |
|
|| | | ||||||| ||||| |||||||| |||| ||||||| ||||| ||| |||||||||||||| |||| |
|
|
| T |
41413490 |
acaagaatgggcaaggcagagatattttgaaagctcgcaaaagtagttttaaatggaagattgtgaacacaagaaa |
41413415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1880 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1880
Description:
Target: scaffold1880; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 438
Target Start/End: Complemental strand, 87 - 40
Alignment:
| Q |
391 |
tgtgaacacaggaaagtggtaaagcacacttttgtggaattaccacat |
438 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
87 |
tgtgaacacatgaaagtagtaaagcacacttttgcggaattaccacat |
40 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University