View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_high_10 (Length: 345)
Name: NF5355_high_10
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 19937120 - 19937383
Alignment:
| Q |
14 |
aacatgctgctgacttgaattttgaagaggtagagtttctactgcagaagtaggccgagagagttgttgttgtggctgagattgcaagttggttagctct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
19937120 |
aacatgctgctgacttgaattttgaagaggtagagtttttgctgcagaagtaggccgatagagctgttgttgtggctgagattgcaagttggttagctct |
19937219 |
T |
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| Q |
114 |
gtaaagaccggacttgagtgctgagtcggaatagcttcctctgtagcagctggccgagaaacaggttgttggaaggctgcagatgagcctatacctgaag |
213 |
Q |
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||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
19937220 |
gtagggatcagacttgagtgctgagtcggaatagcttcctctgtagcagctggccgagaaataggttgttggaaagctgcagatgagcctatacctgaag |
19937319 |
T |
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| Q |
214 |
ggttatccttaagaggaacccattcagtcctctgtgttggcatttgcttcttaccctgagcaac |
277 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19937320 |
ggttgtccttaagaggaacccattcagtcctctgtgttggcatttgcttcttaccctgagcaac |
19937383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 19937419 - 19937459
Alignment:
| Q |
295 |
gtggatgaatccaccgacaaactgaaacatgatgccctatg |
335 |
Q |
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| T |
19937419 |
gtggatgaatccaccgacaaactgaaatatgatgccctatg |
19937459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 8479066 - 8478801
Alignment:
| Q |
14 |
aacatgctgctgacttgaattttgaagaggtagagtttctactgcagaagtaggccgagagagttgttgttgtggctgagattgcaagttggttagctct |
113 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8479066 |
aacatgctgctgatttgaattttgaagaggtagagtttctgctgcagaagtaggccgagagagttgttattgtggctgagattgcaagttggttagctct |
8478967 |
T |
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| Q |
114 |
gtaaagaccggacttgagtgctgagtcggaatagcttcctctgtagcagctggccgagaaacaggttgttggaaggctgcagatgagcctatacctgaag |
213 |
Q |
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||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478966 |
gtagggactggacttgagttctgagtcggaatagcttccttggtagcagctggccgagaaacaggttgttggaaggctgcagatgagcctatacctgaag |
8478867 |
T |
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| Q |
214 |
ggttatccttaagaggaacccattc---agtcctctgtgttggcatttgcttcttaccctgagcaa |
276 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |
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| T |
8478866 |
ggttgtccttaagaggaacccattcatgagtcctctgtgttggcattggcttcttcccctgagcaa |
8478801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 8478764 - 8478724
Alignment:
| Q |
295 |
gtggatgaatccaccgacaaactgaaacatgatgccctatg |
335 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8478764 |
gtggatgaatccaccgacaaactgaaatatgatgccctatg |
8478724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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