View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_high_19 (Length: 249)
Name: NF5355_high_19
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 6417311 - 6417149
Alignment:
| Q |
22 |
ctaatccttttccttagattaacactttgattttaacaaatccaccgtgatatcaaactcaccctgatgctatagtgacgacgggatgcaactccaccgg |
121 |
Q |
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| T |
6417311 |
ctaatccttttccttagattaacactttgattttaacaaatccaccgtgatatcaaactcacgctaatgctatagtgacgacgggatgcaactccaccgg |
6417212 |
T |
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| Q |
122 |
agatggtgtaccaaacaatagtcgactagttaaggctaatgcgctcaagggcatgtcaatact |
184 |
Q |
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| T |
6417211 |
agatggtgtaccaaacaatagtcgactagttaaggctaatgcgctcaagggcatgtcaatact |
6417149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 6417105 - 6417059
Alignment:
| Q |
185 |
gtgtatttctctcatgtgtgatcttaactctttattaaagaggtgag |
231 |
Q |
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| T |
6417105 |
gtgtatttctctcatgtgtgatcttaactctttattaaagaggtgag |
6417059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6417363 - 6417323
Alignment:
| Q |
1 |
ccagtgccacaagttcttctgctaatccttttccttagatt |
41 |
Q |
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| T |
6417363 |
ccagtgccacaagttcttctgctaatccttttccttagatt |
6417323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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