View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_high_23 (Length: 231)
Name: NF5355_high_23
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_high_23 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0106 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 8479295 - 8479080
Alignment:
| Q |
16 |
cattttcaacatttacctcggtaatttctttttgttgaactggtgctgcttgcatcaaactaatatttccctcatttgtactttgttcttcagcctcatt |
115 |
Q |
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| T |
8479295 |
cattttcaacatttacctccgtaatttctttttgctgaactggtgctgcttgaatcaaactaatatttccctcatttgtactgtgttcttcagcctcatt |
8479196 |
T |
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| Q |
116 |
gtgttgtaaggtggcctccaaagctacaaattcctcagtggaattgatatcctgatgtgtctctgcctgttcactcgtgggctgctgttgggaagtgttg |
215 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
8479195 |
gtgttgtaaggtggcctccaaagctacaaattcgtgagtggaattgatatcctgatgtgtcccttcctgttcactcgtgggctgctgttgggaagtgttg |
8479096 |
T |
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| Q |
216 |
aaagtttacaaatttt |
231 |
Q |
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| T |
8479095 |
aaagtctacaaatttt |
8479080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 19936905 - 19937106
Alignment:
| Q |
16 |
cattttcaacatttacctcggtaatttctttttgttgaactggtgctgcttgcatcaaactaatatttccctcatttgtactttgttcttcagcctcatt |
115 |
Q |
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| T |
19936905 |
cattttcaacatttacctccgtaatttctttttgctgaactggtgctgcttgcatcaaactaatatttccctcatttgtactttgttcttcagcctcatt |
19937004 |
T |
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| Q |
116 |
gtgttgtaaggtggcctccaaagctacaaattcctcagtggaattgatatcctgatgtgtctctgcctgttcactcgtgggctgctgttgggaagtgttg |
215 |
Q |
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| T |
19937005 |
gggttgtaaagtggcctccaaagctacaaattcctcagtggaattgatatcctga--------------ttcactcgtgggctgctgttgggaagtcttg |
19937090 |
T |
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| Q |
216 |
aaagtttacaaatttt |
231 |
Q |
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||||| | |||||||| |
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| T |
19937091 |
aaagtctgcaaatttt |
19937106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0106 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0106
Description:
Target: scaffold0106; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 22581 - 22515
Alignment:
| Q |
142 |
caaattcctcagtggaattgatatcctgatgtgtctctgcctgttcactcgtgggctgctgttggga |
208 |
Q |
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||||||| |||||||||| ||| |||||| |||||||| |||| |||| ||||||||||||||||| |
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| T |
22581 |
caaattcttcagtggaatggatgtcctgaagtgtctcttcctgctcacgagtgggctgctgttggga |
22515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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