View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_high_3 (Length: 593)
Name: NF5355_high_3
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_high_3 |
 | |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 19 - 581
Target Start/End: Complemental strand, 36735816 - 36735253
Alignment:
| Q |
19 |
tgtttggttacgtgactgtatttttatttacccatatagtacattgatagttattggttatgcaaagcatgaatatcacaaagaaaatgatagttatgat |
118 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735816 |
tgtttggttatgtgactgtatttttatttactcatatggtacattgatagttattggttatgcaaagcatgaatatcacaaagaaaatgatagttatgat |
36735717 |
T |
|
| Q |
119 |
ttatgaataccacaaagcaacaagaggactaaaaatataaattttcaatatgaagttgcannnnnnn-cctcccctaaacatgatcaaaatcacatagaa |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36735716 |
ttatgaataccacaaagcaacaagaggactaaaaatataaattttcaatatgaagttgcattttttttcctcccctaaacatgatcaaaatcacatagaa |
36735617 |
T |
|
| Q |
218 |
ggaaaaggattaaatctaggcacagggacacaaattaaaggatgagcccttgcaagggtcaacccaggtttctcttccatattaacaatcccattaccac |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735616 |
ggaaaatgattaaatctaggcacagggacacaaattaaaggatgagcccttgaaagggtcaacccaggtttctcttccatattaacaatcccattaccac |
36735517 |
T |
|
| Q |
318 |
ctttaaccttccattcaaaacattgaatcatagcagcaagatttgtttgcacaacatgcaaagccaatgatgttccagggcatgctcttcttccactccc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735516 |
ctttaaccttccattcaaaacattgaatcatagcagcaagatttgtttgcacaacatgcaaagccaatgatgttccagggcatgctcttcttccactccc |
36735417 |
T |
|
| Q |
418 |
aaatggaatcaaatgaaaatgttgacccctcacatctaaatttccaacttcattaataaacctttctggcctaaactcaagtggattatcccaataatta |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735416 |
aaatggaatcaaatgaaaatgttgacccctcacatctaaatttccaacttcattaataaacctttctggcctaaactcaagtggattatcccaataatta |
36735317 |
T |
|
| Q |
518 |
gggtcccttccaatagaccatatattaacaaacaattgtgtctttgctggtatctcatagcctt |
581 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735316 |
gggtcccttccaatagaccatatattaacaaacaattgtgtctttgctggtatctcatagcctt |
36735253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 236 - 363
Target Start/End: Complemental strand, 25169723 - 25169599
Alignment:
| Q |
236 |
ggcacagggacacaaattaaaggatgagcccttgcaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaa |
335 |
Q |
| |
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|||||||| |||||||| |||||||||||||||| |||||||| | |||||||||||||| | ||| ||||||||||| | ||| |||||||||| |
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| T |
25169723 |
ggcacaggaacacaaatcaaaggatgagcccttggaagggtcacggccggtttctcttccatgtcaactttcccattacca---tcaacattccattcaa |
25169627 |
T |
|
| Q |
336 |
aacattgaatcatagcagcaagatttgt |
363 |
Q |
| |
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|||| |||||||| |||||||||||||| |
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| T |
25169626 |
aacactgaatcattgcagcaagatttgt |
25169599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 363
Target Start/End: Complemental strand, 24941287 - 24941163
Alignment:
| Q |
236 |
ggcacagggacacaaattaaaggatgagcccttgcaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaa |
335 |
Q |
| |
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|||||||| |||||||| |||||||||||||||| |||||| | | | |||||||||||| ||||| ||||||||||| | ||| |||||||||| |
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| T |
24941287 |
ggcacaggaacacaaatcaaaggatgagcccttggaagggttacagcggatttctcttccatgttaactttcccattaccatc---aacattccattcaa |
24941191 |
T |
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| Q |
336 |
aacattgaatcatagcagcaagatttgt |
363 |
Q |
| |
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|||| |||||||| |||||||||||||| |
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| T |
24941190 |
aacactgaatcattgcagcaagatttgt |
24941163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 510
Target Start/End: Original strand, 38807637 - 38807755
Alignment:
| Q |
392 |
ccagggcatgctcttcttccactcccaaatggaatcaaatgaaaatgttgacccctcacatctaaatttccaacttcattaat-aaacctttctggccta |
490 |
Q |
| |
|
|||||||| |||||||||||| | |||||||| || || || |||| ||| |||||||||||||| || |||||| | || |||||| || |||||| |
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| T |
38807637 |
ccagggcaagctcttcttccagttccaaatggtataaattggaaattttgtcccctcacatctaacttattcacttcactcataaaacctctc-ggccta |
38807735 |
T |
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| Q |
491 |
aactcaagtggattatccca |
510 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
38807736 |
aactcaagtggattctccca |
38807755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 241 - 510
Target Start/End: Complemental strand, 25914 - 25648
Alignment:
| Q |
241 |
agggacacaaattaaaggatgagcccttgcaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacat |
340 |
Q |
| |
|
||||||||| || |||||||||||||||| ||||||| | || |||||||||||| |||| | ||||||||||| ||||||| |||||||||| |
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| T |
25914 |
agggacacacatcaaaggatgagcccttggaagggtcgtcgaagctttctcttccatgctaactgttccattaccacc---aaccttcaattcaaaacac |
25818 |
T |
|
| Q |
341 |
tgaatcatagcagcaagatttgtttgcacaacatgcaaagccaatgatgttccagggcatgctcttcttccactcccaaatggaatcaaatgaaaatgtt |
440 |
Q |
| |
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||||| |||||||||||||||||| | ||||| || | || ||||| || ||||| || |||||||||||| |||||||| || || || |||| || |
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| T |
25817 |
tgaataatagcagcaagatttgttggaacaacttgaagcgcgaatgaggtaccaggacaagctcttcttccaaatccaaatggtataaattggaaatttt |
25718 |
T |
|
| Q |
441 |
gacccctcacatctaaatttccaacttcattaataaacctttctggcctaaactcaagtggattatccca |
510 |
Q |
| |
|
| ||||| | ||| || || ||||| | |||||||| ||||| |||||||||||||||| ||||| |
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|
| T |
25717 |
gtccccttagatcaaacttattcccttcactcataaacctctctggtttaaactcaagtggattttccca |
25648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 364
Target Start/End: Complemental strand, 12279 - 12159
Alignment:
| Q |
241 |
agggacacaaattaaaggatgagcccttgcaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacat |
340 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||| ||||||||||||||| ||||| | |||| |||||| ||| |||||||||||||| |
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| T |
12279 |
agggacacatatcaaaggatgagcccttggaagggtggttgaaggtttctcttccatgttaactgttccatcaccacc---aactttccattcaaaacac |
12183 |
T |
|
| Q |
341 |
tgaatcatagcagcaagatttgtt |
364 |
Q |
| |
|
|||||||| ||||||||||||||| |
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| T |
12182 |
tgaatcattgcagcaagatttgtt |
12159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 363
Target Start/End: Complemental strand, 20064 - 19946
Alignment:
| Q |
242 |
gggacacaaattaaaggatgagcccttgcaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacatt |
341 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| || | | |||||| ||||| ||||| | ||||||||||| |||||||||||||||||| | |
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| T |
20064 |
gggacacaaatcaaaggatgagcccttggaaggctcgtggccgctttctcatccatgttaacttttccattaccacc---aaccttccattcaaaacact |
19968 |
T |
|
| Q |
342 |
gaatcatagcagcaagatttgt |
363 |
Q |
| |
|
||||||| || ||||||||||| |
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|
| T |
19967 |
gaatcattgcggcaagatttgt |
19946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 9568 - 9688
Alignment:
| Q |
241 |
agggacacaaattaaaggatgagcccttgcaagggtcaacccaggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacat |
340 |
Q |
| |
|
||||||||| || |||||||||||||| | ||||||||| | |||||||||||||| ||||| | |||| ||||| |||||||||| | ||||||| |
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|
| T |
9568 |
agggacacacatcaaaggatgagccctaggaagggtcaaagctggtttctcttccatgttaactgttccatcaccac---taaccttccaataaaaacat |
9664 |
T |
|
| Q |
341 |
tgaatcatagcagcaagatttgtt |
364 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
9665 |
tgaatcattgcagcaagatttgtt |
9688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 464 - 567
Target Start/End: Original strand, 6026839 - 6026942
Alignment:
| Q |
464 |
acttcattaataaacctttctggcctaaactcaagtggattatcccaataattagggtcccttccaatagaccatatattaacaaacaattgtgtctttg |
563 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||||||||||| ||||||||||| | ||| || ||||| | ||||| |||||||||||| |||||||| |
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| T |
6026839 |
acttcatttataaaccttagtggttgaaactcaagtggattttcccaataatttgagtctctaccaattgcccataaattaacaaacaaagttgtctttg |
6026938 |
T |
|
| Q |
564 |
ctgg |
567 |
Q |
| |
|
|||| |
|
|
| T |
6026939 |
ctgg |
6026942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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