View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_high_6 (Length: 391)
Name: NF5355_high_6
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 377
Target Start/End: Complemental strand, 1517855 - 1517483
Alignment:
| Q |
5 |
tgtcgaacaatatctgcaaaggtggctgatttaaaggcagtccttcatgattggaagcaatttaggaggttagacttaaaggttaactctacgataaata |
104 |
Q |
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| T |
1517855 |
tgtcgaagcatagctgcaaaggtggctgatttaaaggcagtccttcatgattggaagcaatttaggaggttagacttagaggttaactctacgataaata |
1517756 |
T |
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| Q |
105 |
tcaattggacaagtcaccaatggtgtttgaggtcttggtgatgacctaacagaactatgtgtcaatcatcaactaataattgtttattagttgaataatg |
204 |
Q |
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| T |
1517755 |
tcaattggacaagtcaccaatggtgtttgaggtcttggtgatgacctaacagaactatgtgtcaatcatcaactaataattgtttattagttgaataatg |
1517656 |
T |
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| Q |
205 |
atatttacatatgcatttctattttgtgtactctaatctaaaatagacatttgagcttgtgaggaaaataggttaaatttacatttcaagatagtttagt |
304 |
Q |
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| T |
1517655 |
atatttacatatgcatttctattttatgtattctaatctaaaataggcatttgagcttgtgaggcaaataggttaaatttacatttcaagatagtttagt |
1517556 |
T |
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| Q |
305 |
tatcgatgagctaaaacatcaaatggaccattatcgttggcattattgaagcactttgttccaatgtcatgat |
377 |
Q |
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| T |
1517555 |
tatcgatgagctaaaacatcaaatggaccattatggttggcattattgaagcactttgttccaatgtcatgat |
1517483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 1512639 - 1512579
Alignment:
| Q |
18 |
ctgcaaaggtggctgatttaaaggcagtccttcatgattggaagcaatttaggaggttaga |
78 |
Q |
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| T |
1512639 |
ctgcgaaggtggccgatttgaaggcaacccttcgtgattggaagcaatttaggaggttaga |
1512579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 16643513 - 16643395
Alignment:
| Q |
18 |
ctgcaaaggtggctgatttaaaggcagtccttcatgattggaagcaatttaggaggttagacttaaaggttaactctacgataaatatcaattggacaag |
117 |
Q |
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| T |
16643513 |
ctgcaaaggtggctgatttaaaggcagccctacatgattggaaaaaatttaggaggttag------aggttaactatacaatggatatgaattggacaag |
16643420 |
T |
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| Q |
118 |
tcaccaatggtgtttgaggtcttgg |
142 |
Q |
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| T |
16643419 |
tcatcagtggtgtgtgaagtcttgg |
16643395 |
T |
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