View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5355_low_1 (Length: 773)

Name: NF5355_low_1
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5355_low_1
NF5355_low_1
[»] chr7 (21 HSPs)
chr7 (24-763)||(4647063-4647784)
chr7 (183-303)||(4666917-4667039)
chr7 (189-320)||(4712075-4712208)
chr7 (183-320)||(4846009-4846148)
chr7 (185-319)||(4783831-4783967)
chr7 (185-319)||(4816260-4816396)
chr7 (185-319)||(4636820-4636956)
chr7 (183-239)||(4643714-4643772)
chr7 (630-764)||(17245446-17245580)
chr7 (183-239)||(4863965-4864023)
chr7 (384-442)||(4630780-4630838)
chr7 (203-326)||(4653476-4653601)
chr7 (410-450)||(4846225-4846265)
chr7 (183-238)||(4630971-4631028)
chr7 (408-450)||(4636708-4636750)
chr7 (408-444)||(4661649-4661685)
chr7 (408-444)||(4666786-4666822)
chr7 (384-444)||(4672527-4672587)
chr7 (183-239)||(4697184-4697242)
chr7 (183-238)||(4672720-4672777)
chr7 (399-440)||(4653375-4653416)
[»] scaffold0252 (1 HSPs)
scaffold0252 (544-760)||(4846-5062)
[»] chr2 (1 HSPs)
chr2 (544-762)||(25101607-25101825)
[»] chr3 (5 HSPs)
chr3 (576-760)||(8562975-8563159)
chr3 (576-762)||(6009013-6009199)
chr3 (613-762)||(17783823-17783976)
chr3 (613-762)||(19085342-19085495)
chr3 (613-762)||(19092450-19092603)
[»] chr4 (1 HSPs)
chr4 (183-320)||(18925736-18925875)
[»] chr8 (2 HSPs)
chr8 (574-762)||(15993397-15993585)
chr8 (576-762)||(14502697-14502883)
[»] chr5 (2 HSPs)
chr5 (576-762)||(22289352-22289538)
chr5 (574-759)||(28243619-28243804)
[»] chr6 (1 HSPs)
chr6 (613-742)||(26904527-26904656)


Alignment Details
Target: chr7 (Bit Score: 574; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 24 - 763
Target Start/End: Complemental strand, 4647784 - 4647063
Alignment:
Q  24 tcccaattcttccaagtaaaaatttagttacactcaatataaactgagaaagtaaaggcaatgtgtcaaattagtaatggtgaaatgagtagaaatgtat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647784 tcccaattcttccaagtaaaaatttagttacactcaatataaactgagaaagtaaaggcaatgtgtcaaattagtaatggtgaaatgagtagaaatgtat 4647685  T
Q  124 taagaattagttttcaaagttttctcttttttcactctatctatcctgtccatcaacttattttgaagttgattctggttttacttatatggtaaggtta 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647684 taagaattagttttcaaagttttctcttttttcactctatctatcctgtccatcaacttattttgaagttgattctggttttacttatatggtaaggtta 4647585  T
Q  224 cttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtttatagatgatattttggttgaacaatatgctgatgtgattgca 323  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||          
T  4647584 cttttgtgagtttgattgacatataaagaattcaggtgatacagtttttcatatgtttatagatgatattttggctgaacattatgctgatgtg------ 4647491  T
Q  324 tgggctggtatgtgattgcatgggctggtgctccctgtcaataaggattgtgcttgttcatatgtactctccaggaggaaggaatcaaattgaaagagtt 423  Q
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4647490 --------------attgcatgggctggtgctccctgtcaataaggattgtgcttgttcatatgtactctcaaggaggaaggaatcaaattgaaagagtt 4647405  T
Q  424 aatctttcaatcaagcttcaatgattattccaaaattaatatcatgcgcggaggatatgtccgtctggagaaagactcattgccacaatttaaagcgcga 523  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647404 aatctttcaatcaagcttcaacgattattccaaaattgatatcatgcgggaaggatatgtccgtctggagaaagactcattgccacaatttaaagcgcga 4647305  T
Q  524 tattgacaattgttgcaaagaaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctg 623  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  4647304 tattgacaattgttgcaaagaaatgcaagacacgcggctgcaagctactggtgaggaccaaactcgcatgtttgagctaaggaaacgcttgcaacggctg 4647205  T
Q  624 ctgtcccaagacgatgcc--tattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagc 721  Q
     ||||| |||||||||||  ||||||| |||| |||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  4647204 atgtcctaagacgatgcctatattggcgtcaacgtgctaaagcacacttgtacaaggatggtgatagaaatacaaagttttttcatgcatcggcaacagc 4647105  T
Q  722 ttggaaaaaggtaaaccgtataacctctcttgatgatgatgt 763  Q
    | |||||||| |||||||||||||||||||||||||||||||    
T  4647104 tcggaaaaagttaaaccgtataacctctcttgatgatgatgt 4647063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 183 - 303
Target Start/End: Complemental strand, 4667039 - 4666917
Alignment:
Q  183 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt 280  Q
    ||||| |||||||||||  ||||||||||||||||||||| |  ||||||||||||||||| ||||| |||||| ||||||||| ||||||||| || ||    
T  4667039 attttaaagttgattctatttttacttatatggtaaggttgcatttttgtgagtttgattggcatatcaagaatccaggtgatagagtttttcagatttt 4666940  T
Q  281 tatagatgatattttggttgaac 303  Q
    ||||||||||||| ||| |||||    
T  4666939 tatagatgatattatggctgaac 4666917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 189 - 320
Target Start/End: Original strand, 4712075 - 4712208
Alignment:
Q  189 aagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtttataga 286  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||||||||   | ||| ||||||  |||||||| ||||||||| || |||||  |    
T  4712075 aagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatatttatcaa 4712174  T
Q  287 tgatattttggttgaacaatatgctgatgtgatt 320  Q
    ||||||||||| ||||||||| ||||||||||||    
T  4712175 tgatattttggctgaacaatacgctgatgtgatt 4712208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 183 - 320
Target Start/End: Original strand, 4846009 - 4846148
Alignment:
Q  183 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt 280  Q
    |||| |||||||||||| ||||||||||||||||||||||||  |||||||||||||||   | ||  ||||||  |||||||| ||||||||| || ||    
T  4846009 atttcgaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttaccaagaataaaggtgatagagtttttcagatatt 4846108  T
Q  281 tatagatgatattttggttgaacaatatgctgatgtgatt 320  Q
    |||  |||||||||||| ||||| ||||||||||||||||    
T  4846109 tatcaatgatattttggctgaactatatgctgatgtgatt 4846148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 185 - 319
Target Start/End: Original strand, 4783831 - 4783967
Alignment:
Q  185 tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta 282  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| ||||| ||  | |  ||||||| | ||||||| || || |    
T  4783831 tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttca 4783930  T
Q  283 tagatgatattttggttgaacaatatgctgatgtgat 319  Q
    ||||||||| ||||| ||||||   ||||||||||||    
T  4783931 tagatgatagtttggctgaacatgctgctgatgtgat 4783967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 185 - 319
Target Start/End: Original strand, 4816260 - 4816396
Alignment:
Q  185 tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta 282  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| ||||| ||  | |  ||||||| | ||||||| || || |    
T  4816260 tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttca 4816359  T
Q  283 tagatgatattttggttgaacaatatgctgatgtgat 319  Q
    ||||||||| ||||| |||||  | ||||||||||||    
T  4816360 tagatgatagtttggctgaactttttgctgatgtgat 4816396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 4636956 - 4636820
Alignment:
Q  185 tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta 282  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| ||||| ||  ||  |||||||| ||| ||||| || || |    
T  4636956 tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaactataaaggtgatagagtctttcagatattca 4636857  T
Q  283 tagatgatattttggttgaacaatatgctgatgtgat 319  Q
    ||||| | | |||||||||| || | || ||||||||    
T  4636856 tagataacactttggttgaagaaaaggcggatgtgat 4636820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 4643772 - 4643714
Alignment:
Q  183 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgat 239  Q
    ||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  4643772 attttgaggttgattctggttttacttatatggtaaggttacatttttgtgagtttgat 4643714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 630 - 764
Target Start/End: Complemental strand, 17245580 - 17245446
Alignment:
Q  630 caagacgatgcctattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaa 729  Q
    ||||| ||||| |||||||  ||| |||| ||  |||| ||||||||||||||||||||||| || || |||||||||||||| || | |||| | ||||    
T  17245580 caagatgatgcttattggcggcaacgtgcaaagactcattggtacaaggatggcgatagaaacaccaaattttttcatgcatctgctacagctcgtaaaa 17245481  T
Q  730 aggtaaaccgtataacctctcttgatgatgatgtc 764  Q
    ||||||| || || |  |||||||| |||||||||    
T  17245480 aggtaaatcgcattatttctcttgacgatgatgtc 17245446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 4864023 - 4863965
Alignment:
Q  183 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgat 239  Q
    |||||||||||||||||  |||||||||||||||||||||||  |||||||||||||||    
T  4864023 attttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgat 4863965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 4630838 - 4630780
Alignment:
Q  384 tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttc 442  Q
    ||||||||||| || ||||||   |||||||||||||||||||||||||||||||||||    
T  4630838 tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttcaatcaagcttc 4630780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 326
Target Start/End: Complemental strand, 4653601 - 4653476
Alignment:
Q  203 tttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtttatagatgatattttggttg 300  Q
    |||||||||||||| |||||||  |||||||| |||||||| | ||| ||| ||  |||||||| |||||| || || |||||| ||||| | |||| ||    
T  4653601 tttacttatatggtcaggttacatttttgtgaatttgattggcgtatcaaggataaaggtgatagagttttccagatatttatacatgatttcttggctg 4653502  T
Q  301 aacaatatgctgatgtgattgcatgg 326  Q
    ||| | |||||||||||||| |||||    
T  4653501 aaccaaatgctgatgtgatttcatgg 4653476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 4846225 - 4846265
Alignment:
Q  410 aaattgaaagagttaatctttcaatcaagcttcaatgatta 450  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  4846225 aaattgaaagagttaatctttcaatcaagcttcaacgatta 4846265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 4631028 - 4630971
Alignment:
Q  183 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttga 238  Q
    |||||||||||||||||  |||||||||||||||||| ||||  ||||||||||||||    
T  4631028 attttgaagttgattcttcttttacttatatggtaagattacatttttgtgagtttga 4630971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 450
Target Start/End: Complemental strand, 4636750 - 4636708
Alignment:
Q  408 tcaaattgaaagagttaatctttcaatcaagcttcaatgatta 450  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  4636750 tcaaattgaaagagtttatctttcaatcaagcttcaacgatta 4636708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 444
Target Start/End: Complemental strand, 4661685 - 4661649
Alignment:
Q  408 tcaaattgaaagagttaatctttcaatcaagcttcaa 444  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4661685 tcaaattgaaagagttgatctttcaatcaagcttcaa 4661649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 444
Target Start/End: Complemental strand, 4666822 - 4666786
Alignment:
Q  408 tcaaattgaaagagttaatctttcaatcaagcttcaa 444  Q
    ||||||||||||||||||||||||||| |||||||||    
T  4666822 tcaaattgaaagagttaatctttcaattaagcttcaa 4666786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 4672587 - 4672527
Alignment:
Q  384 tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaa 444  Q
    ||||||||||| || ||||||   |||||||||||||||||||||||| || |||||||||    
T  4672587 tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttctattaagcttcaa 4672527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 4697184 - 4697242
Alignment:
Q  183 attttgaagttgattctggttttacttatatggtaaggtt--acttttgtgagtttgat 239  Q
    |||| |||||||||  ||||||||||||||||||||||||  | |||||||||||||||    
T  4697184 atttcgaagttgatgttggttttacttatatggtaaggttgcatttttgtgagtttgat 4697242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 4672777 - 4672720
Alignment:
Q  183 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttga 238  Q
    ||||||| |||||||||  ||| |||||||||||||||||||  ||||||||||||||    
T  4672777 attttgaggttgattcttctttcacttatatggtaaggttacatttttgtgagtttga 4672720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 4653416 - 4653375
Alignment:
Q  399 aggaaggaatcaaattgaaagagttaatctttcaatcaagct 440  Q
    |||||| | |||||||||||||||||||||| ||||||||||    
T  4653416 aggaagcactcaaattgaaagagttaatcttacaatcaagct 4653375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 544 - 760
Target Start/End: Original strand, 4846 - 5062
Alignment:
Q  544 aaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgccta 643  Q
    ||||||||||||||||| |||| ||| || | ||||| |||| | | ||| |||| ||| ||||||   |||||||  || |||||||||||||||||||    
T  4846 aaatgcaagacacacggatgcatgcttctggggaggatcaaaatcgtatgcttgaacttcggaaacgtatgcaacgcttgttgtcccaagacgatgccta 4945  T
Q  644 ttggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtata 743  Q
    ||||| |||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||| |||||||||||||| ||||||    
T  4946 ttggcgtcaacgtgctaaaactcactggtacaaggatggtgatagaaatacgaagttttttcatgcctcggcaacagcctggaaaaaggtaaatcgtata 5045  T
Q  744 acctctcttgatgatga 760  Q
    || ||||||||||||||    
T  5046 acatctcttgatgatga 5062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 544 - 762
Target Start/End: Original strand, 25101607 - 25101825
Alignment:
Q  544 aaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgccta 643  Q
    |||||||||||| ||| ||| | ||| || | ||||||||||   ||||| |||| |||||||||  | ||||| |  |  |||||||||||||||||||    
T  25101607 aaatgcaagacaaacgactgtatgcttctggggaggaccaaaaccgcatgcttgaccttaggaaatgcatgcaaagcttaatgtcccaagacgatgccta 25101706  T
Q  644 ttggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtata 743  Q
    ||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||| |||  |||||||||||||| |||||    
T  25101707 ttggcgtcaacgtgctaaagctcactggtataaggatggcgacagaaatacaaagttttttcatgcctcgacaacagcccggaaaaaggtaaactgtata 25101806  T
Q  744 acctctcttgatgatgatg 762  Q
    ||||| ||| |||||||||    
T  25101807 acctcccttcatgatgatg 25101825  T

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Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 576 - 760
Target Start/End: Original strand, 8562975 - 8563159
Alignment:
Q  576 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 675  Q
    ||||| |||||| ||||| |||||||| ||||||   |||||||  |||| |||||||||||||||||||||| |||| |||||||| |||||| ||| |    
T  8562975 gaggatcaaactcgcatggttgagcttcggaaacgtatgcaacgattgctatcccaagacgatgcctattggcgtcaacgtgctaaaactcactagtata 8563074  T
Q  676 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatga 760  Q
    ||||||| || ||||||||||||||||||||||| ||||||| | || |||| |||||||| || |||| ||||||||| |||||    
T  8563075 aggatggtgacagaaatacaaagttttttcatgcctcggcaacaactcggaagaaggtaaatcgcataaactctcttgacgatga 8563159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 576 - 762
Target Start/End: Complemental strand, 6009199 - 6009013
Alignment:
Q  576 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 675  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  6009199 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 6009100  T
Q  676 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 762  Q
    || |||| ||  | ||||| ||||||||||| || |||||||  ||| | || |||||||| |||||||| ||||||||||||||||    
T  6009099 agtatggtgaccgtaataccaagttttttcacgcttcggcaacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 6009013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 613 - 762
Target Start/End: Original strand, 17783823 - 17783976
Alignment:
Q  613 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 708  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  17783823 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 17783922  T
Q  709 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 762  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  17783923 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 17783976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 613 - 762
Target Start/End: Original strand, 19085342 - 19085495
Alignment:
Q  613 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 708  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  19085342 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 19085441  T
Q  709 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 762  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  19085442 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 19085495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 613 - 762
Target Start/End: Original strand, 19092450 - 19092603
Alignment:
Q  613 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 708  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  19092450 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 19092549  T
Q  709 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 762  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  19092550 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 19092603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 183 - 320
Target Start/End: Original strand, 18925736 - 18925875
Alignment:
Q  183 attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt 280  Q
    ||||||||||||||||||  ||||||||| ||||||| || |  ||||| ||||||||||| ||||||||||||  |||||||| ||||||||| || ||    
T  18925736 attttgaagttgattctgcctttacttatttggtaagattgcatttttgcgagtttgattggcatataaagaatcaaggtgatagagtttttcagatttt 18925835  T
Q  281 tatagatgatattttggttgaacaatatgctgatgtgatt 320  Q
    ||||||||||| ||||| ||||| | ||||||||||||||    
T  18925836 tatagatgataatttggctgaacgaaatgctgatgtgatt 18925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 574 - 762
Target Start/End: Complemental strand, 15993585 - 15993397
Alignment:
Q  574 gtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggta 673  Q
    |||||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || |||||    
T  15993585 gtgaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggta 15993486  T
Q  674 caaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 762  Q
     |||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  15993485 taaggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 15993397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 576 - 762
Target Start/End: Original strand, 14502697 - 14502883
Alignment:
Q  576 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 675  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  14502697 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 14502796  T
Q  676 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 762  Q
    ||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  14502797 aggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 14502883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 576 - 762
Target Start/End: Original strand, 22289352 - 22289538
Alignment:
Q  576 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 675  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  22289352 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 22289451  T
Q  676 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 762  Q
    ||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  22289452 aggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 22289538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 574 - 759
Target Start/End: Original strand, 28243619 - 28243804
Alignment:
Q  574 gtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggta 673  Q
    |||||||||||  | ||||||| ||||| ||||||    |||||||||| ||||||||| | ||||| ||||||| ||||  ||| ||| |||| |||||    
T  28243619 gtgaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctactgtcccaatatgatgcttattggcttcaacatgcaaaaactcattggta 28243718  T
Q  674 caaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatg 759  Q
     ||||||||  |  | ||||| ||||||||||| || ||||| | |||||| || |||||||| | ||||||||||||||||||||    
T  28243719 taaggatggtaaccgtaataccaagttttttcacgcttcggctacagcttgaaagaaggtaaatcttataacctctcttgatgatg 28243804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 613 - 742
Target Start/End: Original strand, 26904527 - 26904656
Alignment:
Q  613 tgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatc 712  Q
    ||||||||||  |||||||||| |||||||||||||  ||| |||||||  |||| |||||||||||||| ||| |||||||||| || ||||||| |||    
T  26904527 tgcaacggcttttgtcccaagatgatgcctattggcgacaacgtgctaagactcattggtacaaggatggtgatcgaaatacaaaattctttcatgtatc 26904626  T
Q  713 ggcaatagcttggaaaaaggtaaaccgtat 742  Q
     ||   ||||||||| |||||||| |||||    
T  26904627 tgcttcagcttggaagaaggtaaatcgtat 26904656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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