View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_low_10 (Length: 359)
Name: NF5355_low_10
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 42548417 - 42548085
Alignment:
| Q |
11 |
cacagaaccattctacaaaacaatgttcagaatttgcaccagttattggaaacaacaatgaggaagatgcacatgatcttttcaattttgtgaaaaggtc |
110 |
Q |
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| T |
42548417 |
cacagaaccattctacaaaacaatgttcagaatttgcaccagttattggaaacaacaatgaggaagatgcacatgatcttttcaattttgtgaaaaggtc |
42548318 |
T |
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| Q |
111 |
agttccatccaatgatttgatgattaacgcggagaacctactgttcgattacatcgaacaaagcattgaggaaaataatgttattgttaattgtacaaag |
210 |
Q |
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| T |
42548317 |
agttccatccaatgatttgatgattaacgcggagaacctactgttcgattacatcgaacaaagcattgaggaaaataatgttaatgttaattgttcaaag |
42548218 |
T |
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| Q |
211 |
aagcttaacttttgcaaggtggttgaggattggatacaagggcaaccccaagaactgtatttgggttgggaagtgaaagaaggaagacatgtttacatta |
310 |
Q |
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| T |
42548217 |
aagcttaacttttgcaaggtggttgaggattggatacaagggcaaccccaagaactgtatttgggttgggaagtgaaagaaggaagacatgtttacatta |
42548118 |
T |
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| Q |
311 |
gtgagatggaaaaatgtggagagtggaaaaaca |
343 |
Q |
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| T |
42548117 |
gtgagatggaaaaatgtggagagtggaaaaaca |
42548085 |
T |
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