View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_low_13 (Length: 343)
Name: NF5355_low_13
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_low_13 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 7132025 - 7131699
Alignment:
| Q |
17 |
aggaagatattcaaaattattccctctaaaatcaatagtactaccttcaaatctctctggaataaacatctcagcatcagtccaatattgaggatccctt |
116 |
Q |
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| T |
7132025 |
aggaagatattcaaaattattccctctaaaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggatccctt |
7131926 |
T |
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| Q |
117 |
gccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggag |
216 |
Q |
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| T |
7131925 |
gccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggag |
7131826 |
T |
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| Q |
217 |
taggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaatatcattttcagatataatttcttttcctttgcatgcttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7131825 |
taggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaatatcattttcagatataatttcttttcctttgcatgcttc |
7131726 |
T |
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| Q |
317 |
tcttatttcagcttgtgctttgttcat |
343 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
7131725 |
tcttatttcagcttgtgccttgttcat |
7131699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 7154519 - 7154199
Alignment:
| Q |
17 |
aggaagatattcaaaattattccctctaaaatcaatagtactaccttcaaatctctctggaataaacatctcagcatcagtccaatattgaggatccctt |
116 |
Q |
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| T |
7154519 |
aggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggatctctt |
7154420 |
T |
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| Q |
117 |
gccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggag |
216 |
Q |
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| T |
7154419 |
gccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataaaggtg |
7154320 |
T |
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| Q |
217 |
taggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaatatcattttcagatataatttcttttcctttgcatgcttc |
316 |
Q |
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||||| ||||||||| | || ||||| |||||||| || | ||| | ||||| | | |||| ||||||||| |||| ||||||||| ||||||| |
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| T |
7154319 |
aaggtgggtgtaacctcattgtttctttgatcactaacttaaagtaagttagttcatttagatcagattcagatattattttctttcctttgaatgcttc |
7154220 |
T |
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| Q |
317 |
tcttatttcagcttgtgcttt |
337 |
Q |
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||||| ||||||||||||||| |
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| T |
7154219 |
tcttagttcagcttgtgcttt |
7154199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 63 - 258
Target Start/End: Complemental strand, 7141703 - 7141508
Alignment:
| Q |
63 |
tcaaatctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatat |
162 |
Q |
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||||| ||||||||||||||| ||||||||||| ||||||||| |||||| ||| | || ||||| |||| || | |||| |||| ||||||||||||| |
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| T |
7141703 |
tcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatat |
7141604 |
T |
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| Q |
163 |
cataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaatttta |
258 |
Q |
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|||| ||||| || ||||||| ||| |||| ||| || | || ||||||| ||||| ||||||||| || || ||||| |||||||| |||| |
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| T |
7141603 |
catacccatctattttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaatgtttctttgatcactaacttta |
7141508 |
T |
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