View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5355_low_14 (Length: 339)

Name: NF5355_low_14
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5355_low_14
NF5355_low_14
[»] chr6 (3 HSPs)
chr6 (280-329)||(30633434-30633483)
chr6 (280-327)||(11600009-11600056)
chr6 (277-313)||(30634281-30634317)
[»] chr5 (2 HSPs)
chr5 (280-331)||(34954958-34955009)
chr5 (276-324)||(15106450-15106498)
[»] chr4 (5 HSPs)
chr4 (280-329)||(52790458-52790507)
chr4 (279-327)||(33983755-33983803)
chr4 (277-329)||(36046039-36046091)
chr4 (279-327)||(43501715-43501763)
chr4 (277-329)||(54807922-54807974)
[»] chr3 (4 HSPs)
chr3 (280-329)||(23030672-23030721)
chr3 (281-328)||(2451952-2451999)
chr3 (279-329)||(49499655-49499705)
chr3 (286-327)||(2182641-2182682)
[»] chr7 (3 HSPs)
chr7 (280-329)||(37451120-37451169)
chr7 (277-313)||(14678222-14678258)
chr7 (279-327)||(14679274-14679322)
[»] chr2 (5 HSPs)
chr2 (280-329)||(6729705-6729753)
chr2 (281-313)||(5290865-5290897)
chr2 (279-331)||(29132783-29132835)
chr2 (280-328)||(33675632-33675680)
chr2 (280-328)||(34618922-34618970)
[»] scaffold0004 (1 HSPs)
scaffold0004 (286-329)||(39128-39171)
[»] chr8 (3 HSPs)
chr8 (280-331)||(23542891-23542942)
chr8 (273-331)||(4323461-4323519)
chr8 (280-313)||(42182548-42182581)
[»] chr1 (2 HSPs)
chr1 (280-324)||(4199102-4199146)
chr1 (279-327)||(43137574-43137622)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 30633434 - 30633483
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgcc 329  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  30633434 gaattttgctcttcatccagcacatttcgctcgcactttgcagccatgcc 30633483  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 11600056 - 11600009
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgcaccttgcagccatg 327  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  11600056 gaattttgctcttcacccagcacatttcgctcgcaccctgcagccatg 11600009  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 30634317 - 30634281
Alignment:
Q  277 aaagaattttgctcttcatccaacacatttcgctcgc 313  Q
    |||||||||||||||||| |||| |||||||||||||    
T  30634317 aaagaattttgctcttcacccaatacatttcgctcgc 30634281  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 34955009 - 34954958
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgccta 331  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||    
T  34955009 gaattctgctcttcacccatcacatttcgctcgcaccttgcagccatgccta 34954958  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 15106498 - 15106450
Alignment:
Q  276 taaagaattttgctcttcatccaacacatttcgctcgcaccttgcagcc 324  Q
    ||||||||||||||||||| ||| |||||||||||| |||| |||||||    
T  15106498 taaagaattttgctcttcacccagcacatttcgctcccaccctgcagcc 15106450  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 52790507 - 52790458
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgcc 329  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  52790507 gaattttgctcttcacccagcacatttcgctcgcaccctgcagccatgcc 52790458  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 33983755 - 33983803
Alignment:
Q  279 agaattttgctcttcatccaacacatttcgctcgcaccttgcagccatg 327  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  33983755 agaattttgctcttcacccagcacatttcgctcgcaccctgcagccatg 33983803  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 36046039 - 36046091
Alignment:
Q  277 aaagaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgcc 329  Q
    |||||||| |||||||||  || ||||||||||||||||||||||||||||||    
T  36046039 aaagaattatgctcttcactcagcacatttcgctcgcaccttgcagccatgcc 36046091  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 43501715 - 43501763
Alignment:
Q  279 agaattttgctcttcatccaacacatttcgctcgcaccttgcagccatg 327  Q
    |||||||||||||||| ||| ||||||||||||||||| |||| |||||    
T  43501715 agaattttgctcttcacccagcacatttcgctcgcaccctgcaaccatg 43501763  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 54807922 - 54807974
Alignment:
Q  277 aaagaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgcc 329  Q
    |||||||| ||||||||| |||||||||||||||||||||  ||| |||||||    
T  54807922 aaagaattatgctcttcacccaacacatttcgctcgcacccagcaaccatgcc 54807974  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 23030721 - 23030672
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgcc 329  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||||||    
T  23030721 gaattctgctcttcacccaacacatttcgctcgcaccctgcagccatgcc 23030672  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 2451999 - 2451952
Alignment:
Q  281 aattttgctcttcatccaacacatttcgctcgcaccttgcagccatgc 328  Q
    |||| ||||||||| ||| |||||||||||||||||||| ||||||||    
T  2451999 aattctgctcttcacccagcacatttcgctcgcaccttgtagccatgc 2451952  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 49499655 - 49499705
Alignment:
Q  279 agaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgcc 329  Q
    |||||| | ||||||| ||||||||||||| ||||||| ||||||||||||    
T  49499655 agaattctactcttcacccaacacatttcgttcgcaccctgcagccatgcc 49499705  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 2182682 - 2182641
Alignment:
Q  286 tgctcttcatccaacacatttcgctcgcaccttgcagccatg 327  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||    
T  2182682 tgctcttcacccaacacattttgctcgcaccatgcagccatg 2182641  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 37451169 - 37451120
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgcc 329  Q
    ||||| ||||||||||| ||||||||| ||||||||| ||||||||||||    
T  37451169 gaattatgctcttcatcaaacacattttgctcgcaccctgcagccatgcc 37451120  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 14678222 - 14678258
Alignment:
Q  277 aaagaattttgctcttcatccaacacatttcgctcgc 313  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  14678222 aaagaattttgctcttcacccatcacatttcgctcgc 14678258  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 14679322 - 14679274
Alignment:
Q  279 agaattttgctcttcatccaacacatttcgctcgcaccttgcagccatg 327  Q
    |||||||| ||||||| ||| ||||||||||||||||| ||||| ||||    
T  14679322 agaatttttctcttcacccagcacatttcgctcgcaccctgcagtcatg 14679274  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 6729753 - 6729705
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgcc 329  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||||||    
T  6729753 gaattctgctcttcacccaacacatttcgctcgcacc-tgcagccatgcc 6729705  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 5290897 - 5290865
Alignment:
Q  281 aattttgctcttcatccaacacatttcgctcgc 313  Q
    |||||||||||||||||| ||||||||||||||    
T  5290897 aattttgctcttcatccagcacatttcgctcgc 5290865  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 29132835 - 29132783
Alignment:
Q  279 agaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgccta 331  Q
    |||||||||||||||| ||| ||||||||||||||  | ||||||||| ||||    
T  29132835 agaattttgctcttcacccagcacatttcgctcgcgtcctgcagccattccta 29132783  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 33675680 - 33675632
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgc 328  Q
    |||||||||| |||| ||  ||||||||||||||||| |||||||||||    
T  33675680 gaattttgcttttcaccctgcacatttcgctcgcaccctgcagccatgc 33675632  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 34618922 - 34618970
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgc 328  Q
    ||||| ||||||| | ||| ||||||||||||||||| |||||||||||    
T  34618922 gaattctgctctttaaccagcacatttcgctcgcaccctgcagccatgc 34618970  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 329
Target Start/End: Original strand, 39128 - 39171
Alignment:
Q  286 tgctcttcatccaacacatttcgctcgcaccttgcagccatgcc 329  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||    
T  39128 tgctcttcctccaacacatttcgctcgcaccctgcagtcatgcc 39171  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 23542942 - 23542891
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgccta 331  Q
    ||||||||||||||| ||| |||||||||||||| || ||||||||| ||||    
T  23542942 gaattttgctcttcacccagcacatttcgctcgcgccctgcagccattccta 23542891  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 4323519 - 4323461
Alignment:
Q  273 atctaaagaattttgctcttcatccaacacatttcgctcgcaccttgcagccatgccta 331  Q
    |||| ||| ||| ||||||||||||  ||||||||||||||||| | ||||||||||||    
T  4323519 atctcaagtattatgctcttcatcccgcacatttcgctcgcaccctacagccatgccta 4323461  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 42182548 - 42182581
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgc 313  Q
    ||||||||||||||| ||||||||||||||||||    
T  42182548 gaattttgctcttcacccaacacatttcgctcgc 42182581  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 4199146 - 4199102
Alignment:
Q  280 gaattttgctcttcatccaacacatttcgctcgcaccttgcagcc 324  Q
    ||||||||||||||| ||||||||||| |||||| || |||||||    
T  4199146 gaattttgctcttcacccaacacattttgctcgcgccctgcagcc 4199102  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 43137574 - 43137622
Alignment:
Q  279 agaattttgctcttcatccaacacatttcgctcgcaccttgcagccatg 327  Q
    ||||||||||||||||||||  |||||||||||||| | |||| |||||    
T  43137574 agaattttgctcttcatccagtacatttcgctcgcatcctgcaaccatg 43137622  T

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