View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_low_19 (Length: 250)
Name: NF5355_low_19
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 49453769 - 49454016
Alignment:
| Q |
1 |
agcaaacaaatgtatttctaaacccttagcacctaagcgagcaccatgcacaatacactgaattacatttgtatcctaagaaaccctcctcttatacaaa |
100 |
Q |
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| T |
49453769 |
agcaaacaaatgtatttctaaacccttagcacccaagcaagcaccatgtacaatacactgaattacatttgtatcctaagaaaccctcctcttatacaaa |
49453868 |
T |
|
| Q |
101 |
tttggtcgagttatagcctccacaacaacagctgccatgaaaaggccataaccatagagaggagccaataactgctagcataaat---aataattaatga |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| |
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| T |
49453869 |
tttggtcgagttatagcctccacaacaacagctgccatgaaaaggccataaccatagggaggagccaataactgctggcataaataacaataattaatga |
49453968 |
T |
|
| Q |
198 |
ttataattttggtgcttgaatttgagtttctttctcaagaataatcta |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49453969 |
ttataattttggtgcttgaatttgagtttctttctcaaaaataatcta |
49454016 |
T |
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