View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_low_2 (Length: 625)
Name: NF5355_low_2
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-160; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 33416177 - 33415879
Alignment:
| Q |
17 |
ataaaccttattgcttgtcaaatatatgaatgcagtgtatgaagtatttgaaagaatggcatattatggaatatcatcaaatttgatcctcttattcaca |
116 |
Q |
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| T |
33416177 |
ataaaccttattgcttgtcaaatatatgaatgcagtgtatgaagtatttgaaagaatggcatattatggaatatcatcaaatttgatcctcttattcaca |
33416078 |
T |
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| Q |
117 |
aagaaacttcaccaaggaacagtgactgctagtaacaatgtgaccaattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416077 |
aagaaacttcaccaaggaacagtgactgctagtaacaatgtgaccaattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatg |
33415978 |
T |
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| Q |
217 |
ctcaccttggtcgtttttggactttcctcattgcatccttcatttatctctcggtaagcaatagtataagctataatttccttataagcaagtcttaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |
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| T |
33415977 |
ctcaccttggtcgtttttggactttcctcattgcatccttcatttatctctcggtaagcaatagtatatgctataactttcttataagcaagtcttaat |
33415879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 311 - 609
Target Start/End: Complemental strand, 33415845 - 33415546
Alignment:
| Q |
311 |
ttaatttaacatacaatcattgtccaaaaactcattataattattgtaccaatagtaagacattgatttcaatcataataggaggacatctaaaatgtcc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
33415845 |
ttaatttaacatacaatcattgtccaaaaactcattataattattgtaccaatagtaaggcattgatttcaatcttaataggaggacatctaaaatgtcc |
33415746 |
T |
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| Q |
411 |
acagattgcatttaaggttgataatttaattgaaacctcatcctacctatgtctgtatcctcttgcatggaataggtgggagtaattttaaatacaccct |
510 |
Q |
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| T |
33415745 |
acagattgcatttaaggttgataatttaattgaaacctcatcctacccatgtctgtatcctcttgcatggcattggtgggagtaattttaaatacaccct |
33415646 |
T |
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| Q |
511 |
atggacccccatagttttgtccagcttatctcccaactcccacatgtaacatgtaat-gggtcaagattcaaccaagatctttggcaattggcacatgta |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33415645 |
atggacccccatagttttgtccagcttatctcccaactcctacatgtaacatgtaatggggtcaagattcaaccaagatctttggcaattggcacatgta |
33415546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 15727801 - 15727969
Alignment:
| Q |
46 |
atgcagtgtatgaagtatttgaaagaatggcatattatggaatatcatcaaatttgatcctcttattcacaaagaaacttcaccaaggaacagtgactgc |
145 |
Q |
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||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| | | || | |||||| ||||| ||||| || |||||| | |
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| T |
15727801 |
atgcagtgtatgaggtatttgagagaatggcttattatggaatatcatcaaatttgatcttatatttaataaagaagcttcatcaaggtactgtgacttc |
15727900 |
T |
|
| Q |
146 |
tagtaacaatgtgaccaattgggttgggaccatttggatgacacctattttaggtgcttatgttgctga |
214 |
Q |
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| T |
15727901 |
ttctaccaatgttaccaattgggttggtaccatttggatcactccaatattgggtgcttatgttgctga |
15727969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 15735381 - 15735572
Alignment:
| Q |
50 |
agtgtatgaagtatttgaaagaatggcatattatggaatatcatcaaatttgatcctcttattcacaaagaaacttcaccaaggaacagtgactgctagt |
149 |
Q |
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|||||||||||||||||| |||||||| |||||||| |||||||||||||||||| | | || ||||| || ||||| ||||| || ||||| || | |
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| T |
15735381 |
agtgtatgaagtatttgagagaatggcttattatgggatatcatcaaatttgatcttatatttaacaaataagcttcatcaaggtactgtgacctcttct |
15735480 |
T |
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| Q |
150 |
aacaatgtgaccaattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatgctcaccttggtcgtttttggacttt |
241 |
Q |
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| T |
15735481 |
accaatgtcaccaattgggctggcaccatgtggatcactccaatattaggtgcttatgttgctgatacctaccttggccgttattggacttt |
15735572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 15764543 - 15764738
Alignment:
| Q |
46 |
atgcagtgtatgaagtatttgaaagaatggcatattatggaatatcatcaaatttgatcctcttattcacaaagaaacttcaccaaggaacagtgactgc |
145 |
Q |
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|||||||||||| |||||||||||||||| || ||||||||||||||||||||| | ||| || |||||||| ||||||||||| || || || | |
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| T |
15764543 |
atgcagtgtatggcatatttgaaagaatggcttactatggaatatcatcaaatttgtttgtctatttgacaaagaagcttcaccaaggcactgtcacctc |
15764642 |
T |
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| Q |
146 |
tagtaacaatgtgaccaattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatgctcaccttggtcgtttttggacttt |
241 |
Q |
| |
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| ||||||||| ||||||||| |||| ||||||| ||||| || || ||||||||||| ||||||||||||| ||||| || | ||||||||| |
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| T |
15764643 |
ttctaacaatgtcaccaattggattggcaccatttttatgactccaatattaggtgcttacattgctgatgctcatcttggccgctattggacttt |
15764738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 62 - 250
Target Start/End: Original strand, 15778305 - 15778493
Alignment:
| Q |
62 |
atttgaaagaatggcatattatggaatatcatcaaatttgatcctcttattcacaaagaaacttcaccaaggaacagtgactgctagtaacaatgtgacc |
161 |
Q |
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||||||||||||||| || ||||| |||||||||||||||||||| | | ||||||||||||||||| || || || || || |||||||| | | |
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| T |
15778305 |
atttgaaagaatggcttactatggtatatcatcaaatttgatcctatatctgacaaagaaacttcaccagggcactgtcacctcttccaacaatgtcaac |
15778404 |
T |
|
| Q |
162 |
aattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatgctcaccttggtcgtttttggactttcctcattgc |
250 |
Q |
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| T |
15778405 |
aattgggttggaactgtttttattactcccataataggtgcttatgttgctgattctcaccttggtcgctattggacttttgtcattgc |
15778493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 241
Target Start/End: Original strand, 15753410 - 15753604
Alignment:
| Q |
47 |
tgcagtgtatgaagtatttgaaagaatggcatattatggaatatcatcaaatttgatcctcttattcacaaagaaacttcaccaaggaacagtgactgct |
146 |
Q |
| |
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||||||||||| ||||||||||||| || |||| ||||||||||||||||||| | | | || |||||||| ||||||||||| || || | || |
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| T |
15753410 |
tgcagtgtatgggatatttgaaagaattgcttattttggaatatcatcaaatttgtttgtgtatttgacaaagaagcttcaccaaggcactgtcatctct |
15753509 |
T |
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| Q |
147 |
agtaacaatgtgaccaattgggttgggaccatttggatgacacctattttaggtgcttatgttgctgatgctcaccttggtcgtttttggacttt |
241 |
Q |
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| T |
15753510 |
tcaaacaatgtcaacaattgggttggcactgtttttatgactccaatattaggtgcttacattgctgatgctcatcttggtcgctattggacttt |
15753604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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