View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_low_20 (Length: 250)
Name: NF5355_low_20
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1517901 - 1518143
Alignment:
| Q |
1 |
ttgacaaaatccactaaaatagagagtatccaagaacctaacattgagtcccaaatgtccaattataccacctccaatgaggtcaagaagcacatcttgc |
100 |
Q |
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| T |
1517901 |
ttgacaaaatccactaaaatagagagtatccaagaacctaacatttagtcccaaatgtccaattataccacctccaatgaggtcaagaagcacatcttgc |
1518000 |
T |
|
| Q |
101 |
tccttttttcctgtggaattatctttcattccataccatatttcaaacaaagatatggtcttgttattcgacctcgcgaagtaaaatccagtatttattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1518001 |
tccttttttcctgtggaattatctttcattccattccatatttcaaacaaagatatggtcttgttattcgacctcgcaaagtaaaatccagtatttattt |
1518100 |
T |
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| Q |
201 |
gatgtttttctgaccaaggatcattaaggtatgaatctgtgct |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1518101 |
gatgtttttctgaccaaggatcattaaggtatgagtctgtgct |
1518143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 1512702 - 1512929
Alignment:
| Q |
5 |
caaaatccactaaaatagagagtatccaagaacctaacattgagtcccaaatgtccaattataccacctccaatgaggtcaagaagcacatcttgctcct |
104 |
Q |
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||||||||||||||||| || ||||||||||| ||||| ||||| || |||||||||| ||||||| || |||||||||||| ||||||||||||||||| |
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| T |
1512702 |
caaaatccactaaaataaagggtatccaagaatctaaccttgagccctaaatgtccaaatataccagcttcaatgaggtcaataagcacatcttgctcct |
1512801 |
T |
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| Q |
105 |
tttttcctgtggaattatctttcattccataccatatttcaaacaaagatatggtcttgttattcgacctcgcgaagtaaaatccagtatttatttgatg |
204 |
Q |
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| T |
1512802 |
ttttacctgtggaattgtctttctttccataccatgtttcaaacaaggatatggtctttttatttgacctcacaaagaaaaatccagtattgatcaaatg |
1512901 |
T |
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| Q |
205 |
tttttctgaccaaggatcattaaggtat |
232 |
Q |
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| T |
1512902 |
tttttctgaccaaggatcaccaaggtat |
1512929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 1522268 - 1522486
Alignment:
| Q |
5 |
caaaatccactaaaatagagagtatccaagaacctaacattgagtcccaaatgtccaattataccacctccaatgaggtcaagaagcacatcttgctcct |
104 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| | |||| |||||||| || || |||||||||| ||||||||| ||||||||||||||||| |
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| T |
1522268 |
caaaatccactaaaatagagggtatccaagaaccttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctcct |
1522367 |
T |
|
| Q |
105 |
tttttcctgtggaattatctttcattccataccatatttcaaacaaagatatggtcttgttattcgacctcgcgaagtaaaatccagtatttatttgatg |
204 |
Q |
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||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| || || ||| | ||| ||||||||||||| | | ||| |
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| T |
1522368 |
ttttttctgtgaaattatctttcattccataccatgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcgatt |
1522467 |
T |
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| Q |
205 |
tttttctgaccaaggatca |
223 |
Q |
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| T |
1522468 |
tttttctgaccaaggatca |
1522486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 16643572 - 16643814
Alignment:
| Q |
1 |
ttgacaaaatccactaaaatagagagtatccaagaacctaacattgagtcccaaatgtccaattataccacctccaatgaggtcaagaagcacatcttgc |
100 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||| |
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| T |
16643572 |
ttgacaaaaaccactaaaatagagagtatccaagaacctaaccttgagtcccaagtgtccaattataccatgtctaatgaggtcaagaagaacatcttgc |
16643671 |
T |
|
| Q |
101 |
tccttttttcctgtggaattatctttcattccataccatatttcaaacaaagatatggtcttgttattcgacctcgcgaagtaaaatccagtatttattt |
200 |
Q |
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|| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||| ||||| ||| |
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| T |
16643672 |
tctttttttcctgtggaattgtctttctttccataccatgtttcaaacaaagatatggtcttgttattggaccttacaaagtaaaatccggtattgattc |
16643771 |
T |
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| Q |
201 |
gatgtttttctgaccaaggatcattaaggtatgaatctgtgct |
243 |
Q |
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|||||||||||||||||||||| ||| ||| |||||||||| |
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| T |
16643772 |
tgtgtttttctgaccaaggatcatcaagatataaatctgtgct |
16643814 |
T |
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