View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_low_28 (Length: 204)
Name: NF5355_low_28
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_low_28 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: scaffold0272 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 2045 - 1880
Alignment:
| Q |
1 |
atcctcctctaaagtccctcagaatccctccaaatccgccaacaattccgttagcaaatcattctcccaaacaaaaagggggcgtctccgtgaaaaccac |
100 |
Q |
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| T |
2045 |
atcctcctctaaagtcccttagaatccctccaaatccgccaacaattccgttagcaaatcattctcccaaacaaaaagggggcgtctccatgaaaaccac |
1946 |
T |
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| Q |
101 |
caattaccatcgctacgatcaaaatcccccaactcacccaccttcacctccatttgattagaaagc |
166 |
Q |
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| T |
1945 |
caattaccatcgctacgatcaaaatcccccaactcacccaccttcacctccatttgattagaaagc |
1880 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 26728329 - 26728284
Alignment:
| Q |
44 |
aattccgttagcaaatcattctcccaaacaaaaagggggcgtctcc |
89 |
Q |
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| T |
26728329 |
aattccgttagcaactcattctcccaaacaaaaagggggcgcctcc |
26728284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1611116 - 1611039
Alignment:
| Q |
1 |
atcctcctctaaagtccctcagaatccctccaaatccgccaacaattccgttagcaaatcattctcccaaacaaaaag |
78 |
Q |
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| T |
1611116 |
atcctcctctagagtccctctaaagccttccaactccaccaacgactcccttatcaaatcattctcccaaacaaaaag |
1611039 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 15857988 - 15857910
Alignment:
| Q |
29 |
tccaaatccgccaacaattccgttagcaaatcattctcccaaacaaaaagggggcgtctccgtgaaaaccaccaattac |
107 |
Q |
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| T |
15857988 |
tccaaattcgcatacaactcccttaacaaatcaatctcccaaacaaaaagaggacgtctccatgaaaacgaccaattac |
15857910 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 1590729 - 1590802
Alignment:
| Q |
5 |
tcctctaaagtccctcagaatccctccaaatccgccaacaattccgttagcaaatcattctcccaaacaaaaag |
78 |
Q |
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| T |
1590729 |
tcctctacagtccctctaaaaccttccaaatccgcatacaactcccttaacaactcattctcccaaacaaaaag |
1590802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 41573105 - 41573158
Alignment:
| Q |
28 |
ctccaaatccgccaacaattccgttagcaaatcattctcccaaacaaaaagggg |
81 |
Q |
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| T |
41573105 |
ctccaaatcctctaataattccgtcagtaactcattctcccaaacaaaaagggg |
41573158 |
T |
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