View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_low_4 (Length: 556)
Name: NF5355_low_4
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Complemental strand, 34577980 - 34577449
Alignment:
| Q |
11 |
cacagaggaatatcgtgcccattttagcatttgggcattagctaaggtacatgaaacactttttctatacatattg---agacaatgtaatgtatatgtc |
107 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||| |||||||| |
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| T |
34577980 |
cacagaggaatatcgtgcccatttcagcatttgggcattagctaaggtacatgaaacactttttatatacatattgttgagacactgcaatatatatgtc |
34577881 |
T |
|
| Q |
108 |
ataagtttgtcgtttaactatttttattggtttaaataggctcctttattagttggatgtaatattcaagcaatggataatacgacatatgaattgataa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34577880 |
ataagtttgtcgtttaactatttttattggtttaaataggctcctttattagttggatgtaatattcaagcaatggataataccacatatgaattgataa |
34577781 |
T |
|
| Q |
208 |
gcaactcagaagttattgcagtaaaccaaggcaagtagactttcttaaaagatnnnnnnnntgtatttatttcttcaataaaccatgttttaaaaatcat |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
34577780 |
gcaactcagaagttattgcagtaaaccaaggcaagtagactttcttaagagat-aaaaaaatgtatttatttcttcaataaagcatgttttaaaaatcat |
34577682 |
T |
|
| Q |
308 |
atgcttcttttggtcatgcagataaacttggagttcaaggaaagaaagtgaaaagcaacaatgatttagaggtgatattattttcttttcctttatattt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34577681 |
atgcttcttttggtcatgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggtgatattattttcttttcctttatattt |
34577582 |
T |
|
| Q |
408 |
tattctgtttgagttagagtttctttcgacttataaggatcctaannnnnnnnncatacttcaataaaaaacatggatctggaacaaccaaaaaatggaa |
507 |
Q |
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| T |
34577581 |
tattctgtttgagttagagttttttacgacttataaggatcataatttttttttcaaacttcaattaaaaacatggatctggaacaaccaaaaaatgaaa |
34577482 |
T |
|
| Q |
508 |
actattgcaatctagtagtcaataccatttctg |
540 |
Q |
| |
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||| |||||| |||||||||||||||||||||| |
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| T |
34577481 |
actgttgcaaactagtagtcaataccatttctg |
34577449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 34593630 - 34593535
Alignment:
| Q |
143 |
ataggctcctttattagttggatgtaatattcaagcaatggataatacgacatatgaattgataagcaactcagaagttattgcagtaaaccaagg |
238 |
Q |
| |
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||||||||||||||| ||||| ||| |||||| |||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||| |
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| T |
34593630 |
ataggctcctttattggttggttgtgatattcgtgcaatggataataccacatatgaattaataactaactcggaagttattgcagtaaaccaagg |
34593535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 34593428 - 34593372
Alignment:
| Q |
324 |
tgcagataaacttggagttcaaggaaagaaagtgaaaagcaacaatgatttagaggt |
380 |
Q |
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|||||| ||||| |||||||||||||||||||||||||| | |||||||| ||||| |
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| T |
34593428 |
tgcagacaaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
34593372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 4e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 12 - 410
Target Start/End: Complemental strand, 32590219 - 32589816
Alignment:
| Q |
12 |
acagaggaatatcgtgcccattttagcatttgggcattagctaaggtacatgaaacactttttctatacata---ttgagacaatgtaatgtatatgtca |
108 |
Q |
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||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||| | ||||| ||||| || ||||||||| ||||| ||||||||| |
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| T |
32590219 |
acagaggaatatcgttcccatttcagcatctgggcattagctaaggtgcatgaaataatttttatatacctattgttgagacaaagtaatatatatgtca |
32590120 |
T |
|
| Q |
109 |
taagtttg--tcgtttaactatttttattggt-----ttaaataggctcctttattagttggatgtaatattcaagcaatggataatacgacatatgaat |
201 |
Q |
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| | |||| | |||||||||||| ||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||| |
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| T |
32590119 |
ttaatttgttttttttaactattttatttggtttaaattaaataggcccctttattagttggttgtaatattcaagcaatggataatatcacgtatgaat |
32590020 |
T |
|
| Q |
202 |
tgataagcaactcagaagttattgcagtaaaccaaggcaagtagactttcttaaaagatnnnnnnnntgtatttatttcttcaataaaccatgttttaaa |
301 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||| |||||| |||||| || |
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| T |
32590019 |
tgataagcaactctgaagttattgcagtaaaccaaggtaagtagactttcttgaaaga-----aaaatgtattaatttcttaaataaagggtgttttgaa |
32589925 |
T |
|
| Q |
302 |
aatcatatgcttcttttggtcatgcagataaacttggagttcaaggaaagaaagtgaaaagcaacaatgatttagaggtgatattattttcttttccttt |
401 |
Q |
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| ||| | ||||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
32589924 |
actcacaagcttcttgtggtattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggtgacattattttctttcccttt |
32589825 |
T |
|
| Q |
402 |
atattttat |
410 |
Q |
| |
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||||||||| |
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| T |
32589824 |
atattttat |
32589816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 12 - 410
Target Start/End: Complemental strand, 32600667 - 32600264
Alignment:
| Q |
12 |
acagaggaatatcgtgcccattttagcatttgggcattagctaaggtacatgaaacactttttctatacata---ttgagacaatgtaatgtatatgtca |
108 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||| | ||||| ||||| || ||||||||| ||||| ||||||||| |
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| T |
32600667 |
acagaggaatatcgttcccatttcagcatctgggcattagctaaggtgcatgaaataatttttatatacctattgttgagacaaagtaatatatatgtca |
32600568 |
T |
|
| Q |
109 |
taagtttg--tcgtttaactatttttattggt-----ttaaataggctcctttattagttggatgtaatattcaagcaatggataatacgacatatgaat |
201 |
Q |
| |
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| | |||| | |||||||||||| ||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||| |
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| T |
32600567 |
ttaatttgttttttttaactattttatttggtttaaattaaataggcccctttattagttggttgtaatattcaagcaatggataatatcacgtatgaat |
32600468 |
T |
|
| Q |
202 |
tgataagcaactcagaagttattgcagtaaaccaaggcaagtagactttcttaaaagatnnnnnnnntgtatttatttcttcaataaaccatgttttaaa |
301 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||| |||||| |||||| || |
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| T |
32600467 |
tgataagcaactctgaagttattgcagtaaaccaaggtaagtagactttcttgaaaga-----aaaatgtattaatttcttaaataaagggtgttttgaa |
32600373 |
T |
|
| Q |
302 |
aatcatatgcttcttttggtcatgcagataaacttggagttcaaggaaagaaagtgaaaagcaacaatgatttagaggtgatattattttcttttccttt |
401 |
Q |
| |
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| ||| | ||||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
32600372 |
actcacaagcttcttgtggtattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggtgacattattttctttcccttt |
32600273 |
T |
|
| Q |
402 |
atattttat |
410 |
Q |
| |
|
||||||||| |
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|
| T |
32600272 |
atattttat |
32600264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 24883727 - 24883773
Alignment:
| Q |
12 |
acagaggaatatcgtgcccattttagcatttgggcattagctaaggt |
58 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||| |||||| |
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|
| T |
24883727 |
acagaagaatatcgtgcccatttcagcatatgggcattagttaaggt |
24883773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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